Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01316 ATGGCTAACAACGCAGCTGCCTGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGTCCGGACTGGGCAATCAACATAGAGTTGTGTGATATCATTAATATGAACCCTGGGCAAGCAAAGGATGCATTGAAGATACTCAAGAAGCGTTTGGGCAGTAAAAATCCAAAAATACAGCTTCTGGCTCTTTTTGTACTGGAGACCCTTAGTAAAAATTGTGGTGAAAGTGTATTTCAGCAGATCATCGAGCGAGATATCTTACATGAAATGGTTAAGATAGTGAAGAAGAAGCCAGATTTAAATGTGAGGGAAAAGATACTGATTTTAATTGATACATGGCAAGAAGCTTTTGGGGGGCCAACTGGAGTTTATCCTCAATACTATGCAGCGTATAATGAATTAAAGTCTGCTGGAGTTGAATTTCCACCACGAGAAGAGAATAGTGTACCATTCTTCACTCCTCCTCAAACTCAGCCAATTATTCATTCTGCTGCAGAATATGATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGTTTGCTAGAGATTCAGAATGCTCAAGGACTAGCTGATGTATTGATGGAAATTCTTAGCGCCTTGAATCCTAAAGACCGTGAGGGTGTGAAGGAGGAAGTGATTGTTGACCTTGTTGACCAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACGGATGAGCAGCTTTTAGGGCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCTGTCGACATGATGATATTGTGAAAGGAACTGCTGATTCAGGTGCTAGAGAAGCAGAAACTTCAGTTCTGCCACTTGTAAATGTAAACCATGAAGATGATGAATCAGAAGATGATTTTGCTCAACTAGCCCATAGGCCATCACGTGATGCCAGGGAGAATAAACCAGCCTATGACAAGGCAGAACCAGGGAGAATAAACCCACTCATTCCCCCACCACCTGCATCGAAGAAGCCAGTCTACTCTGGCACTGGCATGGTTGACTATCTCAGTGGTGATACATACAAGACAGAAGGATCTTCTGAAAACTCAGAACCCACTTCATTTGCAGCTCCCCCTCATTCTAGCCCTAATCCAACCTCATCAACTATTCCATCACTGTCTTCATCTCGTCCTCATGCTGTGAGTACCTCATCACCAATTTTTAGCAGCCAGCCTGTGTATGATGAACAACCATCTTCTGTGGACAAATCTTCGGAGCATCTGCCTGCAGCTCCCTGGGACGCTCAATCTCCTGGCATCATTCCGCCCCCACCTTCAAAGTATAATCAGAGACAACAGTTTTTTGAGCAACAAGGCACATCTCATTCAAGTAGCGGATCCAGTTCCTCTTATGACAGCTTGGTGGGACAAACTCAAAATCTCTCCCTGAATTCATCCACTCCAACCAAACAACAGAAGCCAGAAGACGCCCTTTTCAAAGATCTAGTTGATTTTGCAAAATCCAAAACCTCATCATCTTCCAAACCCAATAGGTCATATTGA 1536 0.4382 MANNAAACAERATSDMLIGPDWAINIELCDIINMNPGQAKDALKILKKRLGSKNPKIQLLALFVLETLSKNCGESVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYYAAYNELKSAGVEFPPREENSVPFFTPPQTQPIIHSAAEYDDATIQASLQSDASDLSLLEIQNAQGLADVLMEILSALNPKDREGVKEEVIVDLVDQCRSYQKRVMLLVNNTTDEQLLGQGLALNDSLQRVLCRHDDIVKGTADSGAREAETSVLPLVNVNHEDDESEDDFAQLAHRPSRDARENKPAYDKAEPGRINPLIPPPPASKKPVYSGTGMVDYLSGDTYKTEGSSENSEPTSFAAPPHSSPNPTSSTIPSLSSSRPHAVSTSSPIFSSQPVYDEQPSSVDKSSEHLPAAPWDAQSPGIIPPPPSKYNQRQQFFEQQGTSHSSSGSSSSYDSLVGQTQNLSLNSSTPTKQQKPEDALFKDLVDFAKSKTSSSSKPNRSY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01316 511 Pfam GAT domain 193 267 IPR004152 GO:0035091|GO:0043130
Pumo10g01316 511 Gene3D - 2 158 IPR008942 -
Pumo10g01316 511 MobiDBLite consensus disorder prediction 437 484 - -
Pumo10g01316 511 SUPERFAMILY ENTH/VHS domain 4 142 IPR008942 -
Pumo10g01316 511 SUPERFAMILY GAT-like domain 145 267 - -
Pumo10g01316 511 MobiDBLite consensus disorder prediction 295 317 - -
Pumo10g01316 511 Pfam VHS domain 9 134 IPR002014 GO:0035091|GO:0043130
Pumo10g01316 511 PANTHER TOM1-LIKE PROTEIN 1 507 IPR044836 GO:0035091|GO:0043130|GO:0043328
Pumo10g01316 511 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Pumo10g01316 511 CDD VHS 10 135 - -
Pumo10g01316 511 CDD GAT_GGA-like_plant 186 264 - -
Pumo10g01316 511 MobiDBLite consensus disorder prediction 288 489 - -
Pumo10g01316 511 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Pumo10g01316 511 Gene3D - 175 273 IPR038425 -
Pumo10g01316 511 MobiDBLite consensus disorder prediction 351 410 - -
Pumo10g01316 511 PIRSF TOM1 1 510 IPR014645 -
Pumo10g01316 511 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Pumo10g01316 511 FunFam TOM1-like protein 2 4 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01316 Pumo-Chr10 17451128 17457411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01316 - - gmx:100792343 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00840 9 18032471 18032782 Pumo10g01316 10 17451128 17457411 PCT