Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01285 ATGGCCGCGCTCTCTTATCAACCTTTCTTCGCCGTTCACAGAATCACTTCCACTTTCACCGACGCCAATGCCTTCTTCATTCGGCCTCGTCCTTCTGTTCCTCCCTGGCCTCGCCTGCAACGACGTCGTTGCGCACCCGTTCTCGTTGCCATCGCGTCCGTTAAGGAAAATCTCGGTCGTGTTCAAAAGCGTTTCACCGACTTCACGAGCCTGAACTACTGGGTTGTTCGCGACTACTACCGTCTCGTGAACTCCGTCAATGCCTTCGAGCGGCAGATTCAGGCGCTCTCCGATGAACAGCTGGCCGCGAAAACCGCCGAGTTTCGCCACCGGCTCGCGCGGGGGGCCACGCTCGCCGATATTCAAGCTGAGGCGTTCGCTGTTGTTCGTGAAGCTGCATGGAGAAAGCTTGGAATGCGCCATTTTGATGTTCAGATTATTGGTGGAGCAGTGCTGCATGATGGTTCCATTGCTGAGATGAAAACGGGGGAGGGTAAAACCTTGGTTTCCACACTAGCGGCTTATCTTAATGCCCTGACCTCTGAGGGTGTTCATGTGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTATCTGTTGGTCTTATTCAGAGAGGAATGAATTCCGAAGAACGGAGACTCAACTACAGATGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGCGAGATAATCTTGCTGGAAATAGCGAACAGCTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGCAATTGTTGATGAAGTGGACTCTGTCCTGATAGATGAAGGAAGAAATCCCTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCCTCACGATTCCCTGTTGCTGCAAAAGTAGCTGAACTGCTTATACAGGGCATTCATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCTTTAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATGGTTAGAGATGGGAAGGCTTTGATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAGATCACATACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCGGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGAAAAGATTTGCCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGTCCTGTCTTAGTTGGGACAACTAGTGTAGAAAATTCAGAACTTCTGTCTGGTCTGCTTAGGGAATGGAATATTCCTCATAATGTTCTGAATGCTAGACCCAAGTATGCTGCAAAAGAAGCTGAAACTGTTGCACAAGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCTGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCTTACTTTCATTTTTGACACAAGAGGATCCAAATGTTGAACTTGCAGACGAGGCTATTTCACAAAAGGTGCTTCCAAAGATAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGACAGCCTTAATGGCCAAGTATGTATCCAAAAGTGAGGGTAAGAGTTGGACATGTCAGAAGGCTAAATCTTTTATCCTGGAGGCTGTTGAAATGAGCCTTTCATATAGTTTGGAGGAGCTGGAGAAGCTTGCTAATGAAGAATCTGAGATCTACCCTCTTGGTCCAACTGTAGCACTTGCCTATCTGTCAGTTTTGAAGGATTGTGAAGAACACTGTTTGCATGAAGGTTCTGAGGTAAAAAGGCTTGGGGGTCTTCATGTGATTGGTACATCTTTGCATGAGTCCCGGAGAATAGATAACCAGCTACGTGGCAGAGCAGGAAGACAGGGGGATCCAGGATCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGATACTGAATGGGCAGTGAGACTTATCTCAAAGATTACAAATGACGAGGATCTGCCAATTGAGGGTGATGCCATTGTAAAGCAGCTTTTGGCGCTGCAAATCAATGCAGAAAAGTTCTTCTTTGGCATAAGAAAGAACCTTGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAGCATGTTTATGATCTAAGGCAATTAATCTTAACAGGAGATGATGAAAGCTGCTCCCAACACATATTCCAGTACATACAAGCGGTGGTGGACGAGATTGTCTTCAGTAATATTGATCCACTGAAGCATCCAAGTAGCTGGGGTTTGAGTAAGCTCTTGAAAGAGTTTGTGACTGTTGGTGGAAAGCTGTTGCATGAGTCTTTTGAAGGAATTAGTGATGACACTTTGCTAAATTCACTTGGGCTACTGAATGATGTGAGTTCAGTTGATATTGTCAACTTTTCCCTTCCAAATTTGCCAGCACCTCCAAATGCCTTCAGGGGAATTCGCAGGAAGAGCTCTTCATTAAGACGATGGCTTGCTATTTGCACTGATGATTTAATTGGGAATGGGAAGTACCAAACAACTTCTAATCTTCTGCGCAAGTATCTTGGAGATTTTCTAATTGCTTCATATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAGAGACATGCAAAGGAAATTGAGAGAGCTGTTCTTTTGCAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTGAATATTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTATAAAATTGATGGTTGTCGATTTTTTATCTCAATGCTCAGTGCAACTCGAAGGTTAACTGTAGAAGCACTGCTGCGGTATTGGACATTTCCAATGGAATCCCAAGAACTATTTTGA 3150 0.4378 MAALSYQPFFAVHRITSTFTDANAFFIRPRPSVPPWPRLQRRRCAPVLVAIASVKENLGRVQKRFTDFTSLNYWVVRDYYRLVNSVNAFERQIQALSDEQLAAKTAEFRHRLARGATLADIQAEAFAVVREAAWRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNSEERRLNYRCDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDASRFPVAAKVAELLIQGIHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYMVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFRMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLSGLLREWNIPHNVLNARPKYAAKEAETVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTQEDPNVELADEAISQKVLPKIKVGSSSMALLAKTALMAKYVSKSEGKSWTCQKAKSFILEAVEMSLSYSLEELEKLANEESEIYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYIQAVVDEIVFSNIDPLKHPSSWGLSKLLKEFVTVGGKLLHESFEGISDDTLLNSLGLLNDVSSVDIVNFSLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLIASYLNVVEESGYDERHAKEIERAVLLQTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRYWTFPMESQELF 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01285 1049 Gene3D - 290 410 - -
Pumo10g01285 1049 SMART SecA_PP_bind_2 289 400 IPR011130 GO:0016020|GO:0017038
Pumo10g01285 1049 SUPERFAMILY Pre-protein crosslinking domain of SecA 288 409 IPR036670 GO:0016020|GO:0017038
Pumo10g01285 1049 Gene3D Helical scaffold and wing domains of SecA 907 1040 - -
Pumo10g01285 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 457 IPR027417 -
Pumo10g01285 1049 ProSiteProfiles SecA family profile. 61 765 IPR014018 -
Pumo10g01285 1049 CDD SF2_C_secA 462 733 IPR044722 -
Pumo10g01285 1049 FunFam Protein translocase subunit SecA 768 887 - -
Pumo10g01285 1049 Pfam SecA preprotein cross-linking domain 300 400 IPR011130 GO:0016020|GO:0017038
Pumo10g01285 1049 Gene3D Helical scaffold and wing domains of SecA 768 878 - -
Pumo10g01285 1049 FunFam Protein translocase subunit SecA 79 297 - -
Pumo10g01285 1049 Pfam SecA DEAD-like domain 75 443 IPR011115 GO:0005524|GO:0016020|GO:0017038
Pumo10g01285 1049 Pfam SecA Wing and Scaffold domain 763 1038 IPR011116 GO:0016020|GO:0017038
Pumo10g01285 1049 Gene3D - 459 765 IPR027417 -
Pumo10g01285 1049 Hamap Protein translocase subunit SecA [secA]. 53 1041 IPR000185 GO:0005524|GO:0006605|GO:0006886
Pumo10g01285 1049 SMART SecA_DEAD_2 65 444 IPR011115 GO:0005524|GO:0016020|GO:0017038
Pumo10g01285 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 746 IPR027417 -
Pumo10g01285 1049 SUPERFAMILY Helical scaffold and wing domains of SecA 769 869 IPR036266 -
Pumo10g01285 1049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 310 IPR014001 -
Pumo10g01285 1049 SUPERFAMILY Helical scaffold and wing domains of SecA 937 1048 IPR036266 -
Pumo10g01285 1049 FunFam Preprotein translocase SecA subunit 290 410 - -
Pumo10g01285 1049 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 49 1048 IPR000185 GO:0005524|GO:0006605|GO:0006886
Pumo10g01285 1049 CDD DEXDc_SecA 100 456 - -
Pumo10g01285 1049 Gene3D - 80 457 IPR027417 -
Pumo10g01285 1049 FunFam Protein translocase subunit SecA 909 1038 - -
Pumo10g01285 1049 NCBIfam preprotein translocase subunit SecA 86 857 IPR000185 GO:0005524|GO:0006605|GO:0006886
Pumo10g01285 1049 PRINTS SecA protein signature 228 248 IPR000185 GO:0005524|GO:0006605|GO:0006886
Pumo10g01285 1049 PRINTS SecA protein signature 121 145 IPR000185 GO:0005524|GO:0006605|GO:0006886
Pumo10g01285 1049 PRINTS SecA protein signature 175 185 IPR000185 GO:0005524|GO:0006605|GO:0006886
Pumo10g01285 1049 PRINTS SecA protein signature 381 403 IPR000185 GO:0005524|GO:0006605|GO:0006886
Pumo10g01285 1049 PRINTS SecA protein signature 418 435 IPR000185 GO:0005524|GO:0006605|GO:0006886
Pumo10g01285 1049 PRINTS SecA protein signature 159 173 IPR000185 GO:0005524|GO:0006605|GO:0006886
Pumo10g01285 1049 PRINTS SecA protein signature 455 468 IPR000185 GO:0005524|GO:0006605|GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01285 Pumo-Chr10 16842065 16857151 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01285 K03070 - gmx:100793437 1887.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01285 10 16842065 16857151 Pumo10g01285 10 16842065 16857151 ECH