Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01282 ATGATTAAGCTTTGTTCCCAAAGAAATAAAATATTATCCAAATGGGTGCTGTTTGCAAAAATGCACAGCACAAGTGAGGCGATTCAGGAGGTTGGAGAAGCAAGTGAAAGAGTGTGCAAGGTTATGATGACGTGTCCCACACTGGCACTTGACACTGCTCTTAATCAAACTGGAGTTAGAGTTTCCCCTGATTTAGTTGAAAACGTTCTCAAGAGATTCGAGAATGCAGGCATGTCAGCATTTCGGTTCTTTGAATGGGCAGAGAAGCAGAGAGGTTACTCACACAGCATAAGGGCATATCACTTGATGATTGAGTCTTTGGCTAAGATTAGACAGTACCAGATCGTTTGGGACCTTGTTAATGCAATGAGGAAAAAGGGTATGCTAAATGTTGAAACTTTTTGCATCATGATGAGAAAGTATGCCAGGGCTAATAAGGTTGATGAGGCTGTTTACACCTTTAATGTTATGGATAAGTATGATGTGGTTCCGAATCTTGCTGCATTTAATGGTTTGCTGAGTGCTTTGTGCAAGTCCAACAATGTAAGGAAGGCTCAGGAGATTTTTGATGCTATGAAGGGCCGGTTTGTGCCAGACGCGAAAAGTTACAGCATTTTGCTTGAGGGGTGGGGGAAGGCTCCCAATCTTCCCCGGGCAAGGGAGGTTTTTAGAGAGATGGTTCATGCGGGGTGTGATCCTGATGTTGTTACTTATGGTATCATGGTTGATGTTCTTTGCAAAGCGGGGAGGGTTGATGAAGCTGTTGAAGTTGTGAAGGAAATGGATGCGAGCAATTGCAGGCCGACGTCTTTCATTTACAGTGTCTTGGTTCATACTTACGGAGTGGAGCACCGGATTGAAGATGCTATTGATACGTTCCTGGAGATGGAAAGGAAGGGAATCAAGGCTGATGTTGTGGTGTATAATGCCTTGATTGGTGCATTTTGTAAAGTAAATAAGTTCAAAAATGTGCATAGGGTCTTGAAGGAGATGGAGAGCAATGGCATTACTACTAATTCAAGGACCTGCAATGTTATCATAAGCAGTATGATTGGCCAGGGGCAGACTGATAGAGCTTTCCGAGTCTTCCGCCAGATGATCAAGTCATGTGAACCGGATGCTGACACGTATACAATGATGATAAAAATGTTCTGTGAGAAAAATGAACTGGAGATGGCTCTGAAAATATGGAAGTATATGAAGTCAAAACAGTTTGTTCCAAGCATGCACACCTTTTCTGCCCTTATCAAGGGGTTGTGTGAAAAGGGCGATGCTGCAAAAGCTTGTGTTGTGATGGAAGAGATGATAGAGAAGGGAATTCGACCATCACGTGTTACATTTGGGAGGTTAAGACAGTTGCTTATAAAGGAAGGGAGAGAGGATGTGCTCAAATTTCTTCATGAGAAAATGAATCTTCTTGTCAAGGAGCCTTTGTATGATTAG 1443 0.4269 MIKLCSQRNKILSKWVLFAKMHSTSEAIQEVGEASERVCKVMMTCPTLALDTALNQTGVRVSPDLVENVLKRFENAGMSAFRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVNAMRKKGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGRFVPDAKSYSILLEGWGKAPNLPRAREVFREMVHAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDASNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMERKGIKADVVVYNALIGAFCKVNKFKNVHRVLKEMESNGITTNSRTCNVIISSMIGQGQTDRAFRVFRQMIKSCEPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKGDAAKACVVMEEMIEKGIRPSRVTFGRLRQLLIKEGREDVLKFLHEKMNLLVKEPLYD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01282 480 Pfam PPR repeat family 304 349 IPR002885 -
Pumo10g01282 480 Pfam PPR repeat family 372 420 IPR002885 -
Pumo10g01282 480 Pfam PPR repeat family 164 209 IPR002885 -
Pumo10g01282 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Pumo10g01282 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Pumo10g01282 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Pumo10g01282 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Pumo10g01282 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Pumo10g01282 480 Gene3D Tetratricopeptide repeat domain 194 264 IPR011990 GO:0005515
Pumo10g01282 480 Gene3D Tetratricopeptide repeat domain 26 193 IPR011990 GO:0005515
Pumo10g01282 480 Pfam PPR repeat 272 301 IPR002885 -
Pumo10g01282 480 Pfam PPR repeat 133 160 IPR002885 -
Pumo10g01282 480 Pfam PPR repeat 230 261 IPR002885 -
Pumo10g01282 480 SUPERFAMILY TPR-like 26 475 IPR011990 GO:0005515
Pumo10g01282 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Pumo10g01282 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Pumo10g01282 480 PANTHER OS03G0856100 PROTEIN 54 368 - -
Pumo10g01282 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Pumo10g01282 480 Gene3D Tetratricopeptide repeat domain 265 352 IPR011990 GO:0005515
Pumo10g01282 480 NCBIfam pentatricopeptide repeat 133 165 IPR002885 -
Pumo10g01282 480 NCBIfam pentatricopeptide repeat 236 269 IPR002885 -
Pumo10g01282 480 NCBIfam pentatricopeptide repeat 306 337 IPR002885 -
Pumo10g01282 480 NCBIfam pentatricopeptide repeat 410 443 IPR002885 -
Pumo10g01282 480 NCBIfam pentatricopeptide repeat 342 372 IPR002885 -
Pumo10g01282 480 NCBIfam pentatricopeptide repeat 168 195 IPR002885 -
Pumo10g01282 480 NCBIfam pentatricopeptide repeat 272 305 IPR002885 -
Pumo10g01282 480 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Pumo10g01282 480 NCBIfam pentatricopeptide repeat 376 408 IPR002885 -
Pumo10g01282 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Pumo10g01282 480 Gene3D Tetratricopeptide repeat domain 353 478 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01282 Pumo-Chr10 16826149 16828021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01282 91 468 Glycosyltransferase AT1G05670 24.601 2.99e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01282 - - gmx:100790096 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01282 10 16826149 16828021 Pumo10g01282 10 16826149 16828021 ECH