Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01214 ATGCGTAATGGGTTAGCAATGGATTTAAACCAAATCCAGTTAGCTTTACGCTGTTGTGGACGCTTTCAAGCTATCAAACATGCCAAATCACTCCATTCTCTTATAATAAAACTTGGCCTCTTCAATCACGTTTTTCTCCTTAATAACATGATCTCTGTTTATGCCAAGTGTTCCCATTTCGATGATGCACGAACCCTTTTCGACGAAATGCCTCACAGGAACATAGTTTCTTACACAACAATGGTCTCTGCATTCACCAATTCTGGGAGGCCCCACGAGGCTCTTACACTCTACAACCACATGCTGGAATCCAAAACAGTGCAACCCAATCAGTTTTTGTACTCTGCGGTTCTCAAGGCATGTGGTCTCGTGGGTGATGTTGAATTGGGCAAGCTGGTTCACCAACATGTATCTCAAGCTAAGTTAGAGTTTGACACTGTTCTGATGAATGCCCTATTGGACATGTACGTCAAATGTGGGAGCTTGAGGGATGCAAAACGAGTTTTCCATGAAATTCAGTGTAAAAATTCCACTTCATGGAACACCCTCATTCTTGGACATGCTAAACAGGGTTTGATGAGGGATGCGTTGAATCTGTTTCATCAAATGCCAGAACCAGACCTTGTGTCTTGGAATAGCATCATTGCTGGTCTTGTAGACAATGCTAGCCCCCATGCATTGCCATTTGCTTCTATGATGCACGGGAAGGGCCTTAAGCTTGATACATTCACATTCCCGTGTGCCCTCAAAATGTGCAGTCTTCTTGGTGAGTTAACCTTGGGGAGACAGATTCATTGTTGTATTATAAAGTCAGGGTTTGAGCGTAGCTGTTATTGTATATCAGCATTGATTGATATGTATTCGAATTGCAAGCTATTGGATGAAGCAATGAAGATATTTGATAAGAACTCTCCTCTTGCTGAAAGCTTGGCAGTATGGAATTCCATGCTTTCTGGGTATGTTGCCAATGGAGATTGGTGGAAGGCTCTCAATATGATTGCTCGTATGCATCATTCTGGTACACAGTTTGATTCCTATACCTATAGTATTGCTTTAAAGGTCTGCATCTATTTTGATAACCTGAGGTTGGCATCTCAAGTGCATGGATTGGTCATCACTGGTGGCTATGAGTTAGATTATGTTGTTGGAAGCATTCTTATTGATCTATATGCAAAACAGGGCAATATTAACAATGCATTAAGATTGTTTGAAAGGTTGCCAGATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGTTGGTTGTGCTAGATTTGGTTTAGGTACATTGGCTTTTTCCCTCTTTATGGATATGGTTCATTTGGATCTTGAGATTGATCATTTTGTCCTTTCAATTGTTCTGAAAGTTTCTTCAAGTTTGGCATCTCTTCAAAGTGGCAAGCAAATTCATTCTTTCTGTCTTAAGAAGGGGTATGAGTCAGAGAGAGTTATTACAACTGCTCTTACTGATATGTATGCAAAATGTGGTGAGATTGAGGATGCCTTAGCTTTGTTTCATTGTCTTTCCAAACTAGATACCATGAGTTGGACCGGGATTATTGTGGGATGTGCACAAAATGGAAGAGCAGACAAGGCAATTAGTCTTCTGCATAAGATGATAGAATCAGGTACAAAGCCAAATGAAATCACCATTCTTGGTGTTCTTACTGCATGTAGACATGCAGGCTTAGTTGAAGAGGCATGGACTATATTTAAGTATATTGAAACAGAGCATGGATTGACACCATGCCCAGAACATTACAATTGTATGGTTGATATATTTGCTCAAGCAGGACGTTTTAACGAAGCAAGAAACTTGATTAATGAGATGCCATTTCAGCCTGACAAAACCATATGGTGCTCCTTGCTTGGTGCTTGTGGAACTTACAAGAATCGACATCTTGCAAATATTGTTGCTGAGCATCTTCTTGCTACCTCACCAGAAGATGCTTCAGTGTATATAATGCTGTCAAATGTTTATGCATCACTTGGAATGTGGGATAATTTAAGCAAAGTACGAGAAGCTGTCAGAAAAATAGGTATAAAAGGAGCTGGAAAAAGCTGGATCGAGATCTTTAGTTGA 2079 0.4021 MRNGLAMDLNQIQLALRCCGRFQAIKHAKSLHSLIIKLGLFNHVFLLNNMISVYAKCSHFDDARTLFDEMPHRNIVSYTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDVELGKLVHQHVSQAKLEFDTVLMNALLDMYVKCGSLRDAKRVFHEIQCKNSTSWNTLILGHAKQGLMRDALNLFHQMPEPDLVSWNSIIAGLVDNASPHALPFASMMHGKGLKLDTFTFPCALKMCSLLGELTLGRQIHCCIIKSGFERSCYCISALIDMYSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWKALNMIARMHHSGTQFDSYTYSIALKVCIYFDNLRLASQVHGLVITGGYELDYVVGSILIDLYAKQGNINNALRLFERLPDKDVVAWSSLIVGCARFGLGTLAFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKKGYESERVITTALTDMYAKCGEIEDALALFHCLSKLDTMSWTGIIVGCAQNGRADKAISLLHKMIESGTKPNEITILGVLTACRHAGLVEEAWTIFKYIETEHGLTPCPEHYNCMVDIFAQAGRFNEARNLINEMPFQPDKTIWCSLLGACGTYKNRHLANIVAEHLLATSPEDASVYIMLSNVYASLGMWDNLSKVREAVRKIGIKGAGKSWIEIFS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01214 692 Gene3D Tetratricopeptide repeat domain 360 467 IPR011990 GO:0005515
Pumo10g01214 692 Gene3D Tetratricopeptide repeat domain 221 359 IPR011990 GO:0005515
Pumo10g01214 692 Gene3D Tetratricopeptide repeat domain 1 130 IPR011990 GO:0005515
Pumo10g01214 692 Gene3D Tetratricopeptide repeat domain 489 691 IPR011990 GO:0005515
Pumo10g01214 692 FunFam Pentatricopeptide repeat-containing protein chloroplastic 465 560 - -
Pumo10g01214 692 FunFam Pentatricopeptide repeat-containing protein At3g58590 260 362 - -
Pumo10g01214 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Pumo10g01214 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 188 690 IPR046960 GO:0003723|GO:0009451
Pumo10g01214 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Pumo10g01214 692 SUPERFAMILY TPR-like 43 667 IPR011990 GO:0005515
Pumo10g01214 692 Pfam PPR repeat family 73 121 IPR002885 -
Pumo10g01214 692 Pfam PPR repeat family 312 355 IPR002885 -
Pumo10g01214 692 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 363 464 - -
Pumo10g01214 692 FunFam Pentatricopeptide repeat-containing protein At4g08210 561 690 - -
Pumo10g01214 692 Pfam PPR repeat 585 609 IPR002885 -
Pumo10g01214 692 Pfam PPR repeat 514 542 IPR002885 -
Pumo10g01214 692 Pfam PPR repeat 384 410 IPR002885 -
Pumo10g01214 692 Pfam PPR repeat 179 205 IPR002885 -
Pumo10g01214 692 Pfam PPR repeat 148 176 IPR002885 -
Pumo10g01214 692 Pfam PPR repeat 281 302 IPR002885 -
Pumo10g01214 692 Pfam PPR repeat 412 439 IPR002885 -
Pumo10g01214 692 Pfam PPR repeat 485 507 IPR002885 -
Pumo10g01214 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 175 IPR002885 -
Pumo10g01214 692 Pfam E motif 628 689 IPR046848 -
Pumo10g01214 692 NCBIfam pentatricopeptide repeat 76 107 IPR002885 -
Pumo10g01214 692 NCBIfam pentatricopeptide repeat 48 76 IPR002885 -
Pumo10g01214 692 NCBIfam pentatricopeptide repeat 179 204 IPR002885 -
Pumo10g01214 692 NCBIfam pentatricopeptide repeat 312 342 IPR002885 -
Pumo10g01214 692 NCBIfam pentatricopeptide repeat 586 609 IPR002885 -
Pumo10g01214 692 NCBIfam pentatricopeptide repeat 514 547 IPR002885 -
Pumo10g01214 692 NCBIfam pentatricopeptide repeat 150 175 IPR002885 -
Pumo10g01214 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Pumo10g01214 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Pumo10g01214 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Pumo10g01214 692 FunFam Pentatricopeptide repeat-containing protein 25 125 - -
Pumo10g01214 692 Gene3D Tetratricopeptide repeat domain 131 205 IPR011990 GO:0005515
Pumo10g01214 692 FunFam Pentatricopeptide repeat-containing protein At3g49710 126 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01214 Pumo-Chr10 15874578 15876656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01214 2 690 Glycoside Hydrolase AT3G49170 30.213 2.52e-110 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01214 - - gmx:100780678 1285.4