Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01194 ATGGAAAACGCCGACGTTTTCTTGGGCTTACACGACTTCCTCGAGCGCATGCGGCAACCCTCCGCCGCTGAATTCGTCAAAGCAATCAAAAGTTTTATCGTTTCGTTTTCGAACAATGCTCCCGATCCCGATAGGGACAGTGCCGCGGTTCAAGCGTTCCTCGCGAAAATGGAAGCGGATTTCAGGGCTCATCCACTTTGGGCTGGTTGCTCTGAAGAGGAGCTCGAAAGTGCCGGTGAAGGGCTTGAGAAGTATGTTATGACGAAGTTATTTGCTCGTGTATTTGCTTCACTTCCAGATGATGTAAAACTTGATGACCAACTTTCTGAGAAGATGGCTTTGATTCAACAATTTATTCGACCTGAAAATTTGGATATCACGCCAGTATTTCAGAATGAATCATCATGGTTGCTTGCACAGAAAGAATTACAGAAGATCAACATGTACAAGGCACCCAGGGATAAACTTGTCTGTATTCTGAATTGTTGCAGGGTTATTAGCAACTTGCTGCTTAATGCTTCGGTTGCTTCCAGGGAGAATCCTCCAGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTAACCATAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACATCAATCTCGATTGGTTGCAGAAGCAGCATATTACTTTACAAACATGCTCTCTGCTGAGTCGTTCATCTCAAACATCGATGCAAAAGCCATTTCAATGGATGAAGCTGAGTTTGAGAGAAATATGGAATTTGCTCGTGCTATGCTTTCAGGTATTTCAGCTGATACGCAAGATCCTGGTTCACCTTATCAAAATAATGGACAGCATCCAAGAGCAGAACCCACTAAGCACAAAGCTTTGAATGATAATAGCGACCCTGCACTACGAACTCCATCTGTTGCAAAATCAGAAAGCAAGAAAGTGACTTTTGCAGATGAATCATTAATCACAAAAGTTCCATCCCTCTCGGATTTGGAGAATAAAGGAGCAAGTATGATTTTAAAGGAGGATAAGTTGAATGAAGTCTTCGGGGAGTTTCCATATTTGTTTGCTAGTGTAGGTGACCTAACAGTAAGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTTTCTCTTTCCAAATGGGTAGGCGTCTCTCCTACATCTCATCCACCATCCAATTCCCAAAATAATTCTGAAGACCATGCTGAAACCACAATAGATTCTTCAGACAGTGGACCTCTAGATAACAATAATAAATCAGAAGAATCTATTGATACAACAGAGGATAGTTCAGATAAAGTTTCACTTGAGGAGAAAAAAATTGAATCTGGTCTGCCCAAGGATGAGCCAGTTGCTCCTGAAGGTGATGCCCCCACTTAA 1401 0.4168 MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPDRDSAAVQAFLAKMEADFRAHPLWAGCSEEELESAGEGLEKYVMTKLFARVFASLPDDVKLDDQLSEKMALIQQFIRPENLDITPVFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASVASRENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNIDAKAISMDEAEFERNMEFARAMLSGISADTQDPGSPYQNNGQHPRAEPTKHKALNDNSDPALRTPSVAKSESKKVTFADESLITKVPSLSDLENKGASMILKEDKLNEVFGEFPYLFASVGDLTVSDVEDLLNNYKQLVFKYVSLSKWVGVSPTSHPPSNSQNNSEDHAETTIDSSDSGPLDNNNKSEESIDTTEDSSDKVSLEEKKIESGLPKDEPVAPEGDAPT 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01194 466 PANTHER RAB GDP/GTP EXCHANGE FACTOR 6 382 IPR045046 GO:0005085|GO:0016192
Pumo10g01194 466 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Pumo10g01194 466 Gene3D VPS9 domain 99 265 IPR037191 -
Pumo10g01194 466 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Pumo10g01194 466 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Pumo10g01194 466 MobiDBLite consensus disorder prediction 269 308 - -
Pumo10g01194 466 FunFam Vacuolar protein sorting-associated protein 9A 99 265 - -
Pumo10g01194 466 SMART vps9_2 135 254 IPR003123 -
Pumo10g01194 466 MobiDBLite consensus disorder prediction 428 456 - -
Pumo10g01194 466 MobiDBLite consensus disorder prediction 392 466 - -
Pumo10g01194 466 MobiDBLite consensus disorder prediction 269 284 - -
Pumo10g01194 466 MobiDBLite consensus disorder prediction 392 427 - -
Pumo10g01194 466 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Pumo10g01194 466 Gene3D - 17 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01194 Pumo-Chr10 15592687 15598615 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01194 K20131 - gmx:100810958 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01194 10 15592687 15598615 Pumo10g01194 10 15592687 15598615 ECH