Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01190 ATGTCGACCAAAGTACCGGTAGCTCAGATTGAAGAGGGAATATACTCAATAGCAAATAGGAAAAATAAATTGATTAAAAAAGTATCAAGTTTATCGGCAGACAAAGCTGATTCCAAGAAGAGATATCTTCGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGGTCTGACAAAGAGAGACTTAACATCCAATCTGACGCCCAACAAGAAGTCATCGAAAAGCTTTTGTTGATGGTTGACAATTTTGAGAGAACCAAACAGCAAATTAAAGCAGCAACAGAGAAAGAGAAGAAAATTGATGTTAGCTATCAAGGTATTTACAAACAATTTGTAGAGATTCTGAGGAGTCATAATGTTTCAGTGATAGCAACAGTGGGCAAGCCATTTAATCCCTTGCAACATGAAGCCATTGCACGTGAGGAGTCCACAGAGTTCAAGAAAGGGATTATAATTAAAGAATCCCGACGCGGCTTCATGCTCAGAGATCGAGTTCTAAGGCCAGCCCTTGTCAAGGTTTCCTTAGGTCCTGGAAATAAGAAATCTCCTGTGTCTCTGGACAAGTCCATGGAGCAACCTTCAACAGCTGCTGGAATAGATGAAAGATAG 606 0.3927 MSTKVPVAQIEEGIYSIANRKNKLIKKVSSLSADKADSKKRYLRLQADFDNFRKRSDKERLNIQSDAQQEVIEKLLLMVDNFERTKQQIKAATEKEKKIDVSYQGIYKQFVEILRSHNVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKESRRGFMLRDRVLRPALVKVSLGPGNKKSPVSLDKSMEQPSTAAGIDER 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01190 201 MobiDBLite consensus disorder prediction 176 201 - -
Pumo10g01190 201 PRINTS GrpE protein signature 126 141 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo10g01190 201 PRINTS GrpE protein signature 43 59 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo10g01190 201 PRINTS GrpE protein signature 71 86 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo10g01190 201 PRINTS GrpE protein signature 153 172 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo10g01190 201 Coils Coil 72 92 - -
Pumo10g01190 201 ProSitePatterns grpE protein signature. 129 172 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo10g01190 201 Gene3D Head domain of nucleotide exchange factor GrpE 119 173 IPR009012 GO:0006457
Pumo10g01190 201 FunFam Protein GrpE 118 173 - -
Pumo10g01190 201 PANTHER GRPE PROTEIN 13 179 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo10g01190 201 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 23 117 IPR013805 -
Pumo10g01190 201 Hamap Protein GrpE [grpE]. 3 174 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo10g01190 201 Gene3D - 8 115 IPR013805 -
Pumo10g01190 201 CDD GrpE 36 172 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo10g01190 201 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 120 174 IPR009012 GO:0006457
Pumo10g01190 201 Pfam GrpE 19 173 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01190 Pumo-Chr10 15545588 15548982 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01190 K03687 - gmx:100809893 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01190 10 15545588 15548982 Pumo10g01190 10 15545588 15548982 ECH