Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01188 ATGGACTCTCAACCGGGTCTCTCTCTCGGGTTGAGCGCCCCTCTCTCATCATCCGCGGCTCCACTCAGTGGCTCCTCTGTTCCGTGGCGGTTGTTCAACGAAAAACACCCCAAAAAGGAAGAAGAGGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGATGAAACGATTAACTTCATGGACCAGCGCGTGAAGAGGAAGATAGAGGGGCACCAACAACCTTGCTTCCCTTCGAAGCGCGTGGCCGTGGATTCCTCAGTGGGGTGGTGGAACCAGCCACTGGGCGTCGCAGACCCCGAGATTTTCGAAATCATGGAGAAGGAAAAACGAAGACAGTTCAAGGGAATAGAGTTAATTGCTTCAGAGAACTTCGTGTGCAGAGCAGTGATGGAAGCTTTGGGAAGCCATTTAAGCAACAAATATTCCGAGGGAATGCCTGGGGCAAAGTACTACACTGGTAATCAATACATTGACGAGATTGAGTTTCTATGTTGCCAGCGTGCGTTGTTGGCTTTTGATCTTCACCCCAACAATTGGGGTGTTAATGTTCAACCTTATTCTTGTACTTCTGCTAACTTTGCTGTGTACACTGGGATTTTGCATCCCGGGGATAGGATTATGGGTCTTGATTCGCCTTCTGGGGGGCATTTGAGTCATGGTTATTATACTCTTGGTGGGAAGAAGGTTTCTGCTGCTTCTATTTTCTTTGAGACTTTGCCTTATAAGGTTAATCCGCAGAGTGGTTACATAGACTATGATAAGCTAGAGGAGAAAGCGCTGGATTTTAGGCCTAAGATACTTATCTGTGGTGGGAGTTCGTACCCCAGAGAATGGGATTACGCGAGGTTCAGGCAGGTTGCTGATAAGTGTGGGGCGGTGTTGATGTGTGACATGGCTCATATCAGTGGTCTTGTGGCGGCTAAGTATATTAACGGTGGCTTTTACAGGAATGTAGCTAGTCCATTTGATTACTGTGATATTGTTACCTCAACCACTCACAAAAGTCTCCGAGGTCCAAGGGGAGGTATCATCTTTTATAGAAGGGGGACAAAACCAAGGAGGCAAGGCTTTGTTCATAATCATGGAGATGATAATAATTATGATTTCGAGGAGAAAATAAACTTTGCTTTATATCCATCATTACAAGGAGGCCCCCACAATAATCATATTGCTGCTCTTGCCATAGCTTTAAAACAAGTTGCAACTCCAGAGTACAAAGCATACATGCAGCAGGTGAAGAGAAATGCACAGGCATTAGCATCTGCCTTGTTGAGAAGAAATTGCAGATTGGTGACTGATGGGACCGACAATCATCTTTTGCTATGGGATCTAACAGCACGTGGCTTAATTGACAGAAACTATGAAAAGGTCTGTGAGGCATGTCACATCACTCTCAATAAATGTGCCATTTATGGTTCGATTTCTCCTGGAGGAGTGAGAATTGGTACTCCTGCAATGACATCTAGAGGCTGTTTAGAGGAAGATTTTGAGACCATAGCTGATTTTCTTCTTAGGGCGGCTCAGATTACCAGCATTGTGCAAAGGGAACATGGGAAATCATGCAAAGATTTCCTCAAGGGTCTTCAGAATAACAAAGATATTTTTGAGCTCAGAAATCGGGTTGAGACATTCAGTTCCCAGTTTGCAATGCCAGGATTCGATATTTGA 1671 0.4482 MDSQPGLSLGLSAPLSSSAAPLSGSSVPWRLFNEKHPKKEEEEDEEEEEEEEEDDETINFMDQRVKRKIEGHQQPCFPSKRVAVDSSVGWWNQPLGVADPEIFEIMEKEKRRQFKGIELIASENFVCRAVMEALGSHLSNKYSEGMPGAKYYTGNQYIDEIEFLCCQRALLAFDLHPNNWGVNVQPYSCTSANFAVYTGILHPGDRIMGLDSPSGGHLSHGYYTLGGKKVSAASIFFETLPYKVNPQSGYIDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQVADKCGAVLMCDMAHISGLVAAKYINGGFYRNVASPFDYCDIVTSTTHKSLRGPRGGIIFYRRGTKPRRQGFVHNHGDDNNYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKRNAQALASALLRRNCRLVTDGTDNHLLLWDLTARGLIDRNYEKVCEACHITLNKCAIYGSISPGGVRIGTPAMTSRGCLEEDFETIADFLLRAAQITSIVQREHGKSCKDFLKGLQNNKDIFELRNRVETFSSQFAMPGFDI 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01188 556 Pfam Serine hydroxymethyltransferase 97 503 IPR039429 -
Pumo10g01188 556 CDD SHMT 99 545 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Pumo10g01188 556 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 327 343 IPR019798 GO:0030170
Pumo10g01188 556 SUPERFAMILY PLP-dependent transferases 90 553 IPR015424 -
Pumo10g01188 556 Coils Coil 38 59 - -
Pumo10g01188 556 MobiDBLite consensus disorder prediction 1 24 - -
Pumo10g01188 556 MobiDBLite consensus disorder prediction 1 58 - -
Pumo10g01188 556 Hamap Serine hydroxymethyltransferase [glyA]. 94 553 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Pumo10g01188 556 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 83 555 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Pumo10g01188 556 FunFam Serine hydroxymethyltransferase 124 350 - -
Pumo10g01188 556 Gene3D Aspartate Aminotransferase, domain 1 99 552 IPR015422 GO:0003824
Pumo10g01188 556 Gene3D - 124 411 IPR015421 GO:0003824
Pumo10g01188 556 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01188 Pumo-Chr10 15532603 15538106 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01188 K00600 - gmx:100776419 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01188 10 15532603 15538106 Pumo10g01188 10 15532603 15538106 ECH