Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01178 ATGGGTGCATTTTTCAGTGTGGCGAGTACAAAATCTGATCAAAGGGAATGGAATGGAGTCTCTCCAAATGAGTCATGTAAGAGGCAAAGAATGTCACCTACTGTTGATGAAGAGAGTCCAAGGCTAATTCCTAATCTCCCTGATGAGTTATCACTTCAGATTATTGCTAGACTTCCTAGAATTTGTTACTTCAATGTAAGGCGGGTATCAAAGACGTGGAAGTCAACTATCATGAGTTCGGAACTGTATAAACTAAGAAAAGAACTTGGGACAACTGAAGAGTGGCTATATCTGTTGATTAAGGTTGGAGAAAATAATCTTCTGTGGCATGCTCTAGATCCTCGTTCTAAGATATGGCAGAGAGTGCCTAATATGCCCAATTTTGTTAATGAAGAAGAATCTAAAAAAGGTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAGGGTATCCGAATTGCTGAAGTTATTAGAGGCTTTCTTGGACAGAAAGACGCATTTGATGAAATGCCCTTTTGCGGTTGTGCAATTGGAGCTGTTGATGGATGTCTTTATGTTCTTGGTGGATTCTCTAAGGCTTCAACCATGAGATGTGTCTGGCGATTTGATCCGATACAAAATACATGGAGCAAGGTGTCTTCTATGTCCACAGGTCGGGCATACTGTAAGACCGGCATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCTGGATTGGTTCCTCTCCAATCTGCTGAAGTTTTTGACCCCTCTACAGATACATGGTCACATGTACCTAGTATGCCATTCTCTAGAGCTCAAGTCTTGCCCAGTGCTTTTTTGGCTGACATGTTAAAGCCTATTGCAACAGGGTTGACCTCATACAATGGAAGATTATGTGTTCCTCAGAGTCTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATCTATGATCCTGAAACTAACTCTTGGATAGAAATGCCAGCTGGAATGGGTGAGGGATGGCCCGCGCGGCAGGCAGGTACCAAATTGAGTGTTGTAGTGGATGGTGAATTATATGCCTTTGACCCTTCTAATTCTATGGATAGTGGAAGAATCAAGGTATATGATCAAGGTGAAGATGCTTGGAAAGTAGTTATTGGAAAAGTCCCCATATATGATTCTGCCGATTCAGAGTCTCCATATCTACTTGCTGGTTTCCATGGAAAGCTTCATGTCATTACCAAAGATGCCAATCATGATATTGCTGTTCTGCAGGCCGGCCTGCGCGATAATTTGGATTCTTCACCATCACTCTCAAATCTGTCAGAAAGTACATTGCAAGAATCTCCAGAACTGGCTGCCGAATCAGATGCAGCAGTTGTTTGGAGGGTAGTTGCCAGCAGGGATTTTGGGCAGGCTGAACTAGTCAGCTGCCAAGTTATTGATATCTAG 1431 0.427 MGAFFSVASTKSDQREWNGVSPNESCKRQRMSPTVDEESPRLIPNLPDELSLQIIARLPRICYFNVRRVSKTWKSTIMSSELYKLRKELGTTEEWLYLLIKVGENNLLWHALDPRSKIWQRVPNMPNFVNEEESKKGSSRLWMWNMVEGIRIAEVIRGFLGQKDAFDEMPFCGCAIGAVDGCLYVLGGFSKASTMRCVWRFDPIQNTWSKVSSMSTGRAYCKTGILNNKLYVVGGVSQGQAGLVPLQSAEVFDPSTDTWSHVPSMPFSRAQVLPSAFLADMLKPIATGLTSYNGRLCVPQSLYSWPFFVDVGGEIYDPETNSWIEMPAGMGEGWPARQAGTKLSVVVDGELYAFDPSNSMDSGRIKVYDQGEDAWKVVIGKVPIYDSADSESPYLLAGFHGKLHVITKDANHDIAVLQAGLRDNLDSSPSLSNLSESTLQESPELAAESDAAVVWRVVASRDFGQAELVSCQVIDI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01178 476 Gene3D - 109 385 IPR015915 GO:0005515
Pumo10g01178 476 MobiDBLite consensus disorder prediction 15 29 - -
Pumo10g01178 476 SMART fbox_2 46 86 IPR001810 GO:0005515
Pumo10g01178 476 PANTHER OS02G0202900 PROTEIN 24 475 IPR045887 -
Pumo10g01178 476 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Pumo10g01178 476 SUPERFAMILY Kelch motif 95 406 IPR015915 GO:0005515
Pumo10g01178 476 Pfam F-box domain 44 83 IPR001810 GO:0005515
Pumo10g01178 476 MobiDBLite consensus disorder prediction 15 39 - -
Pumo10g01178 476 CDD F-box_AtAFR-like 42 86 - -
Pumo10g01178 476 SMART kelc_smart 229 279 IPR006652 GO:0005515
Pumo10g01178 476 SMART kelc_smart 182 228 IPR006652 GO:0005515
Pumo10g01178 476 Pfam Kelch motif 218 266 IPR006652 GO:0005515
Pumo10g01178 476 Pfam Kelch motif 170 215 IPR006652 GO:0005515
Pumo10g01178 476 SUPERFAMILY F-box domain 39 130 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01178 Pumo-Chr10 15421805 15424250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01178 36 264 Miscellaneous Gene Families AT4G33900 27.119 2.99e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01178 - - gmx:100806691 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01178 10 15421805 15424250 Pumo10g01178 10 15421805 15424250 ECH