Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01165 ATGGCTGCTCTCCGCGCGGTGCTTCGTCACATACACACAAGCACGTTCAGCTGCTTCGCTCCACCGCCGCGCGCACCTATAAGTCACGGTGCGACGTGGCACTGTCTTATTCCCTCTAAACCCTCCAGAACAGTCAAATCCCGCGCCGGTTCAGATAACTACAAGTTAGTGTTGAAGAAAGACGAGCGCTTAGGAGCTGGAGAGTGTGTTGACGAGGTTGGAAGCGGGACCACAATTGCGGCCATCGTAACGTCCTTGGGGGGTCCCCCTGCGGCCGTTGGAATCGTTCGACTTTCGGGCCCAAGTGCGGTGTCCATTGTGGGCCGAGTGTTTCGGCCCGCCAGGAAGACGTGGCGGCCCACCAGCCACGTTGTGGAATACGGCGTCGTCTTGGACTCCGACGGTAATGTGGTCGATGAGGTCTTGGCGGTGCCGATGCTGGCCCCGAGGTCGTACACGCGCGAAGACGTGGTTGAGCTTCAGTGCCACGGGAGCGAAGTGTGTCTGCGTCGCGTGCTAAGGACTTGTTTGGAAGCAGGAGCAACACTTGCTCAACCAGGGGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGTTTAGATCTCTCCCAAGCCGAAAATGTTGCAAGACTAATCAGCGCCAAATCTGTGGCTGCTGCAGATGCTGCACTGGAAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGGACTCACTGCATTGAGTTGCTTACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCGCCTCTGGATTTGAATCTGATTATGGATAAAATCCATAACATGTCAAGAGATGTTGAGAATGCATTGGAGACGGCAAATTATGACAAACTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGCCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTCAGTGGCATTCCTATAACCCTTCTTGATACAGCAGGCATCAGGGACACTGATGACATTGTGGAAAAGATTGGCGTAGAGCGATCTGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACTAAGGAATCAACTGGATCATCCACCCCAGTCATCCTTGTGGTCAACAAGATAGATTGTAAACCTTGTGACGAAACTGAATGGGACAAAGGATGTCAGAGTCATATTTTCAGTAAACATGTGTTTACATGTGCCGTTACTGGTCAAGGATTACAAGACTTAGAGAGGGCAGTATTACAGATTGTGGGTCTTGACGGCATTCCTGCTGGGGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGCAAGGTTACAATCATCCATAAAGGAGGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCGGGATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTTTGTATTGGTAAATAG 1626 0.4877 MAALRAVLRHIHTSTFSCFAPPPRAPISHGATWHCLIPSKPSRTVKSRAGSDNYKLVLKKDERLGAGECVDEVGSGTTIAAIVTSLGGPPAAVGIVRLSGPSAVSIVGRVFRPARKTWRPTSHVVEYGVVLDSDGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLISAKSVAAADAALEGIQGGFSSLVRSLRTHCIELLTEIEARLDFDDEMPPLDLNLIMDKIHNMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSTKESTGSSTPVILVVNKIDCKPCDETEWDKGCQSHIFSKHVFTCAVTGQGLQDLERAVLQIVGLDGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLRDAGLSLGQISGEDISEEVLSNIFGKFCIGK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01165 541 Gene3D Probable tRNA modification gtpase trme; domain 1 67 198 IPR027266 GO:0005515
Pumo10g01165 541 Gene3D tRNA modification GTPase MnmE domain 2 199 541 IPR027368 -
Pumo10g01165 541 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 91 541 IPR004520 GO:0003924|GO:0005525|GO:0006400
Pumo10g01165 541 Gene3D - 294 469 IPR027417 -
Pumo10g01165 541 PANTHER TRNA MODIFICATION GTPASE GTPBP3 59 541 - -
Pumo10g01165 541 Pfam MnmE helical domain 201 538 IPR025867 -
Pumo10g01165 541 Pfam 50S ribosome-binding GTPase 295 416 IPR006073 GO:0005525
Pumo10g01165 541 Pfam GTP-binding protein TrmE N-terminus 78 198 IPR018948 -
Pumo10g01165 541 FunFam tRNA modification GTPase MnmE 294 469 - -
Pumo10g01165 541 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 293 462 IPR031168 -
Pumo10g01165 541 FunFam tRNA modification GTPase MnmE 73 198 - -
Pumo10g01165 541 CDD trmE 291 462 IPR031168 -
Pumo10g01165 541 Hamap tRNA modification GTPase MnmE [mnmE]. 77 541 IPR004520 GO:0003924|GO:0005525|GO:0006400
Pumo10g01165 541 NCBIfam small GTP-binding protein domain 294 423 IPR005225 GO:0005525
Pumo10g01165 541 CDD TrmE_N 78 197 IPR018948 -
Pumo10g01165 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 457 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01165 Pumo-Chr10 15092481 15096186 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01165 K03650 - gmx:100818096 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01165 10 15092481 15096186 Pumo10g01165 10 15092481 15096186 ECH