Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01158 ATGGAGCACTTCAACAACGACGATCTCGAGTACGTTGTCGACGACTACTACGACTTCCAAGGCGAAGACACCACCTCCGACATTGCTCCTCAACCAACCTCCGATGTCGATTCTCAGGACTCCGACTTCGAAGACGATTTTCCAACGAGTAATGCGAAGACTGACACCACTGCTTCCGAAGCCAGAAACGGGAAAGATATCCAGGGAATCCCCTGGGAGAGGCTTAATTATAGCAGAGACAAATACCGCCAGACCAGACTCAAGCAGTACAAAAATTACGAGAACCTCTCTCGCTCTCGCCACGATCTCGACAAGGAGTGTTTGGAAGTGCAGAAGGGGAAGACTTTCTATGACTTCTTCTTCAATACCAGGCTTGTCAAATCCACAATTGTGCACTTTCAGCTGAGGAATTTGTTGTGGGCAACTTCGAAGCATGATGTATATCTTATGCAAAACTATTCAGTGATGCACTGGTCCGCGTTACTACAAAGGGGTAAAGAAGTGCTTAACGTAGCGAAACCAATGATCCCGACCCTTAAGCGTCCTGGACTTTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTCAAGGAAAATCTGATGGTGGCAGGTGGTTTCCGGGGTGAGCTTATATGCAAGAATTTGAAACATCCTGGAGTTCTATTCTGTGGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTGGATGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTCATCACAGCAAATAATGATTCCCAAGTTCGGGTTTTTGATGCGGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAATACTTCTGTTAGTCCGGATGGAAAGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATAGCTGATACTAACACCGGAAAGATTACTGGGAGCCTAAAAGGGCACTTGGACTACTCTTTTGCATCGGCTTGGCACCCAGATGGGCGAATATTGGCCACTGGGAATCAGGACAAAACATGCAGGTTGTGGGACATAAGAAATCTTTCACAATCTATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCCCTAAGATTCACATCTGATGGACGATTTTTGGCCATGGCTGAACCTGCAGACTTCGTCCATATTTTTGACTCACATTCTGGTTATGAACAAGGTCAAGAGATAGATCTATTTGGCGAGATTGCTGGTATATCCTTTAGCCCGGACACACAGGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCAACAGAAAACGTTACTATCGTTACCTAGACTCCATGCTTTGA 1347 0.4529 MEHFNNDDLEYVVDDYYDFQGEDTTSDIAPQPTSDVDSQDSDFEDDFPTSNAKTDTTASEARNGKDIQGIPWERLNYSRDKYRQTRLKQYKNYENLSRSRHDLDKECLEVQKGKTFYDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSALLQRGKEVLNVAKPMIPTLKRPGLLAQPVSRVQISTMTVKENLMVAGGFRGELICKNLKHPGVLFCGKITTDDNAITNAVDVYRNPAGSLRVITANNDSQVRVFDAENFASLGCFKYDWSVNNTSVSPDGKLLAVLGDSTECLIADTNTGKITGSLKGHLDYSFASAWHPDGRILATGNQDKTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYEQGQEIDLFGEIAGISFSPDTQALFVGIADRTYGSLLEFNRKRYYRYLDSML 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01158 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 357 IPR001680 GO:0005515
Pumo10g01158 448 ProSitePatterns Trp-Asp (WD) repeats signature. 335 349 IPR019775 -
Pumo10g01158 448 SMART WD40_4 309 348 IPR001680 GO:0005515
Pumo10g01158 448 SMART WD40_4 352 391 IPR001680 GO:0005515
Pumo10g01158 448 SMART WD40_4 268 306 IPR001680 GO:0005515
Pumo10g01158 448 SMART WD40_4 211 265 IPR001680 GO:0005515
Pumo10g01158 448 Gene3D - 226 443 IPR015943 GO:0005515
Pumo10g01158 448 MobiDBLite consensus disorder prediction 20 65 - -
Pumo10g01158 448 FunFam WD-40 repeat family protein 229 445 - -
Pumo10g01158 448 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 5 445 - -
Pumo10g01158 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 351 - -
Pumo10g01158 448 Pfam WD domain, G-beta repeat 311 348 IPR001680 GO:0005515
Pumo10g01158 448 SUPERFAMILY WD40 repeat-like 189 428 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01158 Pumo-Chr10 14965189 14970277 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01158 234 428 Miscellaneous Gene Families AT5G08390 24.490 4.95e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01158 - - gmx:100775453 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01158 10 14965189 14970277 Pumo10g01158 10 14965189 14970277 ECH