Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01133 ATGTTCCCTCTTTATATGCGTGGGACAGTGTCTGTGTTACAATCACGAGACGTTTTCATTCTGGTCAGGTGTAGGTCTATTTCGATTGACAAATATTCGTGGAGCTTTGAAGAGCTGCGGTGTCTCTCTTGTTTCACTGGAAAGAAAGAGAAAAACAAGGGTACTGAAGGGTCTTTAACAGGGGACCTTAAAGCTCAACTAGATGAAGTACAGCACCCAAAGATTTCATCAGAGAATCGTGATTTGAAGCCGGCCATCCTTGACCCTACAGTACCCAGTGGTGTGCAGAAGAATTCAAGGGGCAATGTGAGGGTTATGAATCTTGAGAGTCCTGTGAAGACTGAAGTGGAGGAAGCTTATGAAGGGGAAGATGAGCATGAAGAGTCACCTTCCATCAAGAGGGAGCTCTCTGATTTTGATCTCCTAGTCCACGAAGCTGCTGCAAGCAAACGAGGATATGATCCATCAAGTGAAGAGATAAAATACCCCAGTTTATATGAAGACCAAGCTAACATTCAATTGGAAGACAAAGACCATAAATACAGCAAAAGGAGTGATGATATAATCCAAAGTGGACATGTTAGTGATCCTGGGATTGGCAAGGTTGACTTCTGGGCTTCTCCAAAGCTCCAGCGATCCTGTTCTGACCTGGAAAGAAGGGATGTACTAAGGAAGACTTCTCATCTCTTTCCATCTTCAAAGTCACAGTCTTTTGAGAATTTGCAGGAATTATCTGCATATCAGATGGTTAATCCAGAAAGCCCCAGGTCTGTGATGACTCACGGCAGTGCTGATAGAGTGATGTTGAAAAAGCATTCGTCGAGTCAAGTTCTCCCTTCTAGAAGTAAAACATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATACATAGATTGCAGTTAGGCAAATCGACAACAATACATCCCGCAAGTGCTGCTTTAAAGAGTCAATGTGGGTACTCATCAGACACTCTTGAACCAAAACATGGCAAGGCATTGAGACATGTGGAATTGCCCTCACCCAGCTCATCTTATGGGGAATACTTTCACAACAGCTGCGATGACAGAAATATTGATAAGCAAAGGTGGAGCAGATTTCAAAAAGAAAATTTTGGTTTTTGGCCACAAAACCAATGGGTGGCTTTCTCAACAGAATCATCCTCCTTTAGCAGAGTGGATGAGTGGGTGAAAGATCTCGAAATTCAGCAGCCACTTCCTGAGGATGATTTTGATGATGACAATATTGGAAGCAATGCCTTCCCACCTTCTCCTGATGTTATCCCACAATTCATAGCATCCTCAAGCACAGCTCAGCCGGTTCGACATCCAGATGCCAATCTTTCAAAGGAGATATTGAATGCCAATAGTGTGGTTCAGTCCCTGAACCCAGCCTCAACTGCAGCTCATATATCAGGCATTGGTATAAAAGCCATCCCCGCTATTTCACACTTCTCCACTCTCCGCTCTGTCAATCTGTCAAGCAATCTCATAGTTCACATCACGCCTGGATTTCTCCCAAAGGGTCTTCATACTCTGAATCTGTCAAGAAACAAAATCAGCACCATTGAGGGCCTCAGAGAATTAACCCGGCTGCGGGTACTTGACTTAAGTTATAATCGCATCTCAAGAATTGGACAAGGGTTATCAAATTGTACCCTCATCAAAGAGCTATATCTTGCGGGAAACAAGATAAGTGATGTTGAGGGGCTACACAGGTTATTAAAGCTAACAGTTCTGGACTTGAGCTTTAACAAGATTGCAACAACAAAAGCATTAGGCCAGCTGGTGGCTAACTACAACTCACTTCAGGCCCTGAATCTGCTTGGAAATCCAATTCAAAGCAACATCAGTGATAACCAGCTGCGCAAAGCAGTTTGTGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATCAAGCCTCAACGGGGACGAGAAATACTCACTGATAGTGTTGCCAAAGCTGCACTTGGGAACAGCAGCCGGAACTCCTACAGAAGAGCACTAAAGAAAGGTGCTGGCCAAGGAGGGTCAAGTTCCTCCAGTGTGCATAGAAGCAGTGCTAGTGTTTCCCAGAAAAGCAGGAACAGGTCAAGGAGCCAAACCAAACATCATTAG 2124 0.4426 MFPLYMRGTVSVLQSRDVFILVRCRSISIDKYSWSFEELRCLSCFTGKKEKNKGTEGSLTGDLKAQLDEVQHPKISSENRDLKPAILDPTVPSGVQKNSRGNVRVMNLESPVKTEVEEAYEGEDEHEESPSIKRELSDFDLLVHEAAASKRGYDPSSEEIKYPSLYEDQANIQLEDKDHKYSKRSDDIIQSGHVSDPGIGKVDFWASPKLQRSCSDLERRDVLRKTSHLFPSSKSQSFENLQELSAYQMVNPESPRSVMTHGSADRVMLKKHSSSQVLPSRSKTLWWKLFLWSHRNIHRLQLGKSTTIHPASAALKSQCGYSSDTLEPKHGKALRHVELPSPSSSYGEYFHNSCDDRNIDKQRWSRFQKENFGFWPQNQWVAFSTESSSFSRVDEWVKDLEIQQPLPEDDFDDDNIGSNAFPPSPDVIPQFIASSSTAQPVRHPDANLSKEILNANSVVQSLNPASTAAHISGIGIKAIPAISHFSTLRSVNLSSNLIVHITPGFLPKGLHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLIKELYLAGNKISDVEGLHRLLKLTVLDLSFNKIATTKALGQLVANYNSLQALNLLGNPIQSNISDNQLRKAVCGLLPKLVYLNKQSIKPQRGREILTDSVAKAALGNSSRNSYRRALKKGAGQGGSSSSSVHRSSASVSQKSRNRSRSQTKHH 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01133 707 Pfam Leucine Rich repeat 576 587 IPR001611 GO:0005515
Pumo10g01133 707 SMART LRR_sd22_2 529 551 - -
Pumo10g01133 707 SMART LRR_sd22_2 574 595 - -
Pumo10g01133 707 SMART LRR_sd22_2 507 528 - -
Pumo10g01133 707 SMART LRR_sd22_2 552 573 - -
Pumo10g01133 707 Pfam Leucine rich repeat 487 542 IPR001611 GO:0005515
Pumo10g01133 707 MobiDBLite consensus disorder prediction 662 707 - -
Pumo10g01133 707 PANTHER NISCHARIN RELATED 235 697 - -
Pumo10g01133 707 FunFam Outer arm dynein light chain 1 protein 548 646 - -
Pumo10g01133 707 ProSiteProfiles Leucine-rich repeat profile. 531 553 IPR001611 GO:0005515
Pumo10g01133 707 MobiDBLite consensus disorder prediction 676 698 - -
Pumo10g01133 707 ProSiteProfiles Leucine-rich repeat profile. 576 597 IPR001611 GO:0005515
Pumo10g01133 707 Gene3D Ribonuclease Inhibitor 552 647 IPR032675 -
Pumo10g01133 707 ProSiteProfiles Leucine-rich repeat profile. 509 530 IPR001611 GO:0005515
Pumo10g01133 707 SMART LRR_typ_2 574 596 IPR003591 -
Pumo10g01133 707 SMART LRR_typ_2 529 552 IPR003591 -
Pumo10g01133 707 SMART LRR_typ_2 485 507 IPR003591 -
Pumo10g01133 707 SUPERFAMILY Outer arm dynein light chain 1 477 641 - -
Pumo10g01133 707 FunFam Outer arm dynein light chain 1 protein 434 547 - -
Pumo10g01133 707 ProSiteProfiles Leucine-rich repeat profile. 554 575 IPR001611 GO:0005515
Pumo10g01133 707 Gene3D Ribonuclease Inhibitor 415 551 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01133 Pumo-Chr10 14573866 14577623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01133 534 661 Receptor kinase-like Gene Family AT5G07280 35.878 2.66e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01133 - - gmx:100810094 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01133 10 14573866 14577623 Pumo10g01133 10 14573866 14577623 ECH
Pumo9g01364 9 40463776 40467501 Pumo10g01133 10 14573866 14577623 PCT