Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01113 ATGATGCTCCATCACCCATTGCTTTGCGGTTCAAAAGTCGCCACTCAATCCACACTCTTCGCTCCGGTTTTTTCCGGCGGAAACAACGCCGGACGCTGTTCATTTCCCTGTAATTCGTCCGTCCGTGACGTGAGGTCGTTGAGGTTTATGAAGCAAGCATCGGGAAGCAAATCGAGCAATGAACATGGAGTTTTTAGCGAGACAATGGATTGTGCCAAGCATAGGACAACTAATGCTTATGGTAGTCGTGCTCAAGAAGGTGTTCTCGAGGAAGAATCCTCCAAGGTGATAGAGAGCAGACCATCATGGAAATTTTTTCCAGGCCAGGCATTTCCATTGGGGGTGTCAGAAGTTGACAATGGCATCAATTTTGCTATTTTTTCACAACATGCAACTGCTGTCACACTTTGTTTAGTCCTTCCCGAGAGGGGAAGTATTGACGCATTGGATGGTGGCATGATAGAAATGGTTTTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCACGAAGCAATGTTATGTATGGATATCGGATAGATGGACCTCGAGACTGGGGTAAGGGGCACCGATTTGACAGCAGCATTGTGCTTGTTGATCCTTATGCCAAACTAGTAGAAGGTCGAAGATATTTTGGGGATATTAGCATGAAGTTGTCTAAGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTCGACTGGGGAGAAAATTACAAGCTTCCAAACATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGCGCATTTACAAGTGATGAATCTAGTGGTTTGAATAGCAACATTCGTGGCAGCTACCTCGGTGTGATTGAAAAGATTCCACACCTTGTAGAGCTTGGTATCAATGCAGTAGAGTTGCTGCCTATCTTTGAGTTTGATGAGTTGGAATTCCAGAGGCGTCCAAATCCCAGAGATCACATGATTAACACATGGGGTTATTCAACAATAAATTTCTTTGCTCCTATGAGTCGCTATGCAAGTGCTGGTGGAGGATCAGTTAATGCTTCCCGAGAGTTCAAGCAAATGGTTAAAGCCTTACATTCTGCTGGTATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGATGCCTTTCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAATGGGCAATTGCTGAACTTCTCTGGCTGTGGAAATACATTGAATTGTAACCATCCTGTGGTCATGGAGCTAATTCTTGACAGCCTAAGACACTGGGTCACTGAATATCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTGTGTCGAGGAATTGATGGCTCCCCCCTTAATGCCCCCCCACTTATTAGGGCAATTGCCAAAGATGCAGTATTATCAAGATGTAAGATTATTGCAGAGCCTTGGGACTGTGGAGGTCTCTATCTTGTTGGGAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTCTGGTGTGAAGGGGAGCTTTGCAACGCGTGTTGCTGGGTCTTCTGATCTTTACAGATTGAACAAGCGTAAGCCATATCATAGTATTAACTTTGTTATTGCACATGACGGATTCACCTTGCGTGATCTTGTTTCATACAATTTCAAGCACAATGAAGCCAATGGGGAAGGTGGAAACGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTCGAAGGGGAAACTGATGATGCTAGTATAAGTGCTTTGCGATCACGGCAAATGAAAAACTTTCATTTGGCATTAATGATATCTCAGGGTACACCAATGATGCTAATGGCGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAACTTTTTGTGGGATCAGTTGGATGCACGGAAGAGCGATCACTTCAGGTTTTTCTCAAAGGTGATAAAGTACCGGTATGCACATGAAGTATTCACTCATGAAAGTTTTCTCGGCAAGAACGACATAACATGGCATGAAGACAATTGGGACAATCATGACAGCAAATTTCTTGCATTCACGCTTCATGACAGGAGTGGGGGAGATATCTATTTGGCATTTAATGCTCATGATTACTTTGTAAAAGTTCTGCTGCCCACACCTCCAAAAAAGAGAAACTGGTTCCGTGTGGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTAGCATAGGAAACACGTACAATATAGCTCCACACTCCTCCATTCTTCTTGAAGCGAAGTTTTGA 2355 0.4263 MMLHHPLLCGSKVATQSTLFAPVFSGGNNAGRCSFPCNSSVRDVRSLRFMKQASGSKSSNEHGVFSETMDCAKHRTTNAYGSRAQEGVLEEESSKVIESRPSWKFFPGQAFPLGVSEVDNGINFAIFSQHATAVTLCLVLPERGSIDALDGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVMYGYRIDGPRDWGKGHRFDSSIVLVDPYAKLVEGRRYFGDISMKLSKFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTSDESSGLNSNIRGSYLGVIEKIPHLVELGINAVELLPIFEFDELEFQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGSVNASREFKQMVKALHSAGIEVILDVVYNHTNEADDAFPYTTSFRGIDNKVYYMLDNNGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDSGVKGSFATRVAGSSDLYRLNKRKPYHSINFVIAHDGFTLRDLVSYNFKHNEANGEGGNDGSNDNFSWNCGFEGETDDASISALRSRQMKNFHLALMISQGTPMMLMADEYGHTRNGNNNSYGHDTAINNFLWDQLDARKSDHFRFFSKVIKYRYAHEVFTHESFLGKNDITWHEDNWDNHDSKFLAFTLHDRSGGDIYLAFNAHDYFVKVLLPTPPKKRNWFRVVDTNLKSPDDFVLDGVPSIGNTYNIAPHSSILLEAKF 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01113 784 CDD AmyAc_Glg_debranch 240 679 - -
Pumo10g01113 784 Gene3D Glycosidases 236 690 - -
Pumo10g01113 784 Gene3D - 691 784 IPR013780 -
Pumo10g01113 784 SUPERFAMILY (Trans)glycosidases 239 683 IPR017853 -
Pumo10g01113 784 SUPERFAMILY E set domains 107 244 IPR014756 -
Pumo10g01113 784 Gene3D Immunoglobulins 93 230 IPR013783 -
Pumo10g01113 784 SUPERFAMILY Glycosyl hydrolase domain 689 783 - -
Pumo10g01113 784 Pfam Alpha amylase, catalytic domain 281 401 IPR006047 GO:0005975
Pumo10g01113 784 FunFam Glycogen debranching enzyme 236 690 - -
Pumo10g01113 784 PANTHER GLYCOGEN DEBRANCHING ENZYME 72 783 - -
Pumo10g01113 784 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 112 210 IPR004193 GO:0004553|GO:0005975
Pumo10g01113 784 SMART aamy 260 667 IPR006047 GO:0005975
Pumo10g01113 784 CDD E_set_GDE_Isoamylase_N 111 260 IPR044505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01113 Pumo-Chr10 14317321 14335452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01113 83 783 Glycoside Hydrolase AT4G09020 77.350 0.0 1164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01113 K01214 - gmx:100806342 1509.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01113 10 14317321 14335452 Pumo10g01113 10 14317321 14335452 ECH