Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01082 ATGCAAACATCTAGAAAATCACAGAATTCTAGGCAGCCCATACCAAATGATGATACAATTGAGAAGTGGTGGAATCTATATGACAAATTGTGGGTTGTTATTAGCAAGATGAATGGTAAAGGACACAGCAATATGTTACCCAAATCATCGTCATTTGCAGGACCTTCTCTTGGCCAAAGGGCACGTGGTTTAGTTGAGTCATTAAACATTCCTGCTGCTGAAGTGGCTGCAGTTGTTGTAGCAGGAGGGATTGGCACTGCTTTAACTGCAAAACCTAACAAAAATGTTGATAAAGCTATGGTTTTACGAGGAGAGAGGTGTCCAAGAATTGTTTACCACCTTGTTATTCTGTATTTGTGTAAATCCTCTCTAGAAAGGGCATCACGGTGTGTCCACCAGTTCATCTCACTTTTACCTTGCCTTCTAAACGCTGACGATGAGCAAAGCAAGAGCAGGCTGCAACTTATTATCTGGGCACTGCTTTTTGTTAGGTCACAGTATGGAATATTGGATGATGGTGTTCGTTTTCATCTTTTATCACATTTGATACGGGAGACTGTCAATATTGGAAAATCAATGCTTGCTACTAGCATTGCGAGCCGAGATGATGCCTTGGATACTAGCTACAATTCAAAAGATGCAGGGTCCATTCAAAATTTAATTCAAAAGGATCGAGTTCTGACAGCAGTCAGTGATGAGGCTAAATATATGAAGACATCTAAAATGGACCGCACCCAGCAGATACAGGAACTTCATTCTAGAATAGATGAAAACTCCTTGGCAGAATCTAGCGGTAAGAAAGCTTTTGAAGACGATATACAAAGTAGCTTGAACTCTGTTCTTGCTTCAGATGATAGCAGAAGAGCTGAATTCCAACTTATGAGGAAAAGCAGCAAAATGTTGCTGGTTGCTTTGTTACAGGAAAAATGGATACACATGTTTCGTTCTTTAATTGATGAGAGGGGTCCATGGTCTACTAACCCTTTTCCAAATTGTGTTGTAACACACTGGAAACTTGATAAGACAGAAGACACATGGCGACGCAGGCCAAAATTAAGGCAAAATTACCATTTTGATGAAAATCTGTGTAGTCCTCTTTCTGCCACTGGTAGTGGGGTTGTTACTCCTGTTAATGAAAGTAATCCTGGTTTTGTGGGTAATATACCTGAACAAATGAAGCAGCTCTTGCTGAAAGGAATAAGAAAAATAACTGATGAGGGAACTTTGGACATTAGTGAAACCAATACTGAAGTAAGTGGACAAAAGACTCAAATTCCCGCTGATCAGTCAGACTGCCAATCCTCAGACTTAGTAAAGGATGTCAGTGACAGAAAGGATATTGTGCAAGAACGAAAAGACACTTCCTCTTCTCCTGAAACAGAAGCTAGTGAGGTGCTTGTATCAATTCCATGCGTTCTCGTGACCCCAAAGAGAAAATTAGCTGGTCATTTAGCAGTGATGAAAAATGTTTTGCATTTCTTTGCTCAATTCTTGGTAGAGGGTACTGGTGGATCATCTGTTTTTAGAAACTTTGATGCCTCAATTAATTCTGATCCGACCAAGTCTGATCTAAAACAAAGATCATTGAAGTGGCCTGTTTCTGGTATGGATCCTCAGAAGGGAACTGCAGTCGGTAATGTGGAGCTAATAAATGGAAATGGATGTGTTAAACTTATGAGATGTGTTAAACGCCATCGAAGATGGAGCGTGGCCAAGATAAAAGCTGTTCATTGGACACGGTATTTGCTCAGATATACTGCAATAGAGATTTTCTTTAGTGATTCAGTTGCCCCAGTATTTTTAAACTTTGCATCACAGAAGGATGCAAAAGATATAGGAAACTTGATAGTTACTACAAGAAATGAATATTCATTTCCCAAAGGAAGTGGAAAGGATAAGAGTGGATCTATCAGTTTTGTTGATCGACGAGTGGCACAGGAAATGGCAGAAACTGTCAGAGAAAGCTGGAGGAGAAGGGATATAACAAACTTTGAGTATTTAATGATTCTCAATACTCTTGCTGGAAGATCTTATAATGATTTGACCCAATATCCTGTTTTTCCTTGGGTCTTGGCTGACCTCTCATCAGAGGTTCTTGATTTTAATAAATCATCTACATTTCGAGATCTCTCAAAGCCTGTTGGAGCGCTTGATACTAAACGATTTGAGGTATTTGAAGATAGATACCGTAACTTCTGTGATCCTGATATACCCAGTTTCTACTATGGATCTCATTACTCAAGTATGGGCATTGTGCTTTATTACCTTCTTAGATTAGAGCCCTTTACCTCTCTTCACCGCAATCTGCAGGGTGGTAAATTTGATCATGCTGACCGTCTTTTTCAAAGCATTGAGGCCACCTACAGAAATTGCCTTACAAATACTAGTGATGTGAAGGAGTTAATACCCGAGTTCTTTTACATGCCTGAGTTTCTTGTCAATTCAAACTCTTATCATCTAGGAGTTAAACAGGATGGTGAACCTATTGGGGATGTTTGCCTGCCTCCTTGGGCTAAGGGTTCACCTGAAGAATTCATTAGGAGAAATCGGGAGGCACTTGAAAGTGAATATGTTAGCTCAAATCTTCATCACTGGATAGATTTGGTATTTGGTTACAAGCAACGTGGAAAACCTGCTGTAGAGGCAGCGAACATCTTCTACTACTTGACTTATGAAGGTGCTGTTGATCTGGAAACAATGGAAGATGATTTGCAAAGAGCAGCTATTGAAGACCAGATAGCCAACTTTGGTCAGACTCCAATCCAGATATTTCGTAAGAAACACCCAAGAAGAGGGCCACCTATTCCAATTGCACATCCTTTGTACTTTGCTCCTGATTCTATCAGTTTGACTTCCATTGTTTGTAATACAAGTCAATATTCATCTGCTATGTTGTATGTTGGTCTGATGGACTCAAATATTGTCCTTGTGGACGAGGGTCTCAACTTGTCTGTTAAGATGTGGTTGACAACTCAACTACAGTCTGGTGGAAATTTTACATTTTCTGGTTCCCAGGATCCATTCTTTGGAGTTGGTTCCGACATACTTTCTCCACGCAAAATTGGGATTCCTGTGCCTGAAAATGTTGAACTGGGAGCTCAATGTTTTGCAACAATGCAGACACCCTCCGAGAATTTCTTAATTTCATGTGGCAATTGGGAAAATAGTTTTCAGGTCATATCATTAAGCGATGGCAGAATGGTACAGAGTATCCGACAGCACAAGGATGTGGTGAGCTGTGTTGCAGTTACATCTGATGGAAGTATCCTTGCAACTGGAAGTTATGATACAACAGTAATGGTTTGGGAAGCTTTTCGTGGTAAAACCACAGAAAAGAGAATTCGAAACAGTCAATCTGAGTTACCCCGTAAGAATTATGTCATAATTGAAACTCCATGCCACATCCTTTGTGGGCATGATGATATAATAACTTGTTTATATGTTAGTCATGAACTTGATATTATAATTAGTGGATCAAAAGATGGAACTTGTGTATTCCACACCCTGCGAGAAGGTAGATATGTTAGATCCATACGGCAGCCATCAGGCAGTCCAATAACAAAGTTAGTTGTCTCTCAGCGGGGCCAGATTGTGATTTATGCTGATGATGATCTTAGTTTGCACCTGTATTCAATTAATGGAAAATATCTTGCTGCCTCTGAATCCAATGGACGCTTTAATGCTGTTCAACTGAGCAGATGTGGAGAGTTTTTGGTAGGTGCAGGTGACCAGGGGCAGATTGTTGTTCGCTCTATGAACACCCTTGAAGTTGTTAAGAAATATCAAGGAGTTGGAAAGGTTATGACATCTCTGGCAGTAACGCCAGAAGAATGCTTCTTAGCTGGCACAAAAGATGGAACCCTCCTAGTGTACTCGATAGAAAATCCTCAGATTCGTAAAACTAGCCACAACAAAAGTACAAAATCAAAACTGACATAA 3939 0.4011 MQTSRKSQNSRQPIPNDDTIEKWWNLYDKLWVVISKMNGKGHSNMLPKSSSFAGPSLGQRARGLVESLNIPAAEVAAVVVAGGIGTALTAKPNKNVDKAMVLRGERCPRIVYHLVILYLCKSSLERASRCVHQFISLLPCLLNADDEQSKSRLQLIIWALLFVRSQYGILDDGVRFHLLSHLIRETVNIGKSMLATSIASRDDALDTSYNSKDAGSIQNLIQKDRVLTAVSDEAKYMKTSKMDRTQQIQELHSRIDENSLAESSGKKAFEDDIQSSLNSVLASDDSRRAEFQLMRKSSKMLLVALLQEKWIHMFRSLIDERGPWSTNPFPNCVVTHWKLDKTEDTWRRRPKLRQNYHFDENLCSPLSATGSGVVTPVNESNPGFVGNIPEQMKQLLLKGIRKITDEGTLDISETNTEVSGQKTQIPADQSDCQSSDLVKDVSDRKDIVQERKDTSSSPETEASEVLVSIPCVLVTPKRKLAGHLAVMKNVLHFFAQFLVEGTGGSSVFRNFDASINSDPTKSDLKQRSLKWPVSGMDPQKGTAVGNVELINGNGCVKLMRCVKRHRRWSVAKIKAVHWTRYLLRYTAIEIFFSDSVAPVFLNFASQKDAKDIGNLIVTTRNEYSFPKGSGKDKSGSISFVDRRVAQEMAETVRESWRRRDITNFEYLMILNTLAGRSYNDLTQYPVFPWVLADLSSEVLDFNKSSTFRDLSKPVGALDTKRFEVFEDRYRNFCDPDIPSFYYGSHYSSMGIVLYYLLRLEPFTSLHRNLQGGKFDHADRLFQSIEATYRNCLTNTSDVKELIPEFFYMPEFLVNSNSYHLGVKQDGEPIGDVCLPPWAKGSPEEFIRRNREALESEYVSSNLHHWIDLVFGYKQRGKPAVEAANIFYYLTYEGAVDLETMEDDLQRAAIEDQIANFGQTPIQIFRKKHPRRGPPIPIAHPLYFAPDSISLTSIVCNTSQYSSAMLYVGLMDSNIVLVDEGLNLSVKMWLTTQLQSGGNFTFSGSQDPFFGVGSDILSPRKIGIPVPENVELGAQCFATMQTPSENFLISCGNWENSFQVISLSDGRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEAFRGKTTEKRIRNSQSELPRKNYVIIETPCHILCGHDDIITCLYVSHELDIIISGSKDGTCVFHTLREGRYVRSIRQPSGSPITKLVVSQRGQIVIYADDDLSLHLYSINGKYLAASESNGRFNAVQLSRCGEFLVGAGDQGQIVVRSMNTLEVVKKYQGVGKVMTSLAVTPEECFLAGTKDGTLLVYSIENPQIRKTSHNKSTKSKLT 1312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01082 1312 Gene3D - 463 615 IPR011993 -
Pumo10g01082 1312 SMART Beach_2 653 931 IPR000409 -
Pumo10g01082 1312 ProSiteProfiles Trp-Asp (WD) repeats profile. 1071 1112 IPR001680 GO:0005515
Pumo10g01082 1312 MobiDBLite consensus disorder prediction 415 436 - -
Pumo10g01082 1312 CDD Beach 656 931 IPR000409 -
Pumo10g01082 1312 Pfam Beige/BEACH domain 655 931 IPR000409 -
Pumo10g01082 1312 ProSiteProfiles BEACH domain profile. 641 931 IPR000409 -
Pumo10g01082 1312 Gene3D BEACH domain 644 931 IPR036372 -
Pumo10g01082 1312 Pfam PH domain associated with Beige/BEACH 560 616 IPR023362 -
Pumo10g01082 1312 ProSiteProfiles BEACH-type PH domain profile. 460 617 IPR023362 -
Pumo10g01082 1312 CDD PH_BEACH 465 620 IPR023362 -
Pumo10g01082 1312 SUPERFAMILY BEACH domain 649 931 IPR036372 -
Pumo10g01082 1312 Gene3D - 1033 1310 IPR015943 GO:0005515
Pumo10g01082 1312 SMART WD40_4 1171 1211 IPR001680 GO:0005515
Pumo10g01082 1312 SMART WD40_4 1129 1168 IPR001680 GO:0005515
Pumo10g01082 1312 SMART WD40_4 1254 1292 IPR001680 GO:0005515
Pumo10g01082 1312 SMART WD40_4 1213 1251 IPR001680 GO:0005515
Pumo10g01082 1312 SMART WD40_4 1064 1103 IPR001680 GO:0005515
Pumo10g01082 1312 SUPERFAMILY PH domain-like 464 618 - -
Pumo10g01082 1312 SUPERFAMILY WD40 repeat-like 1039 1307 IPR036322 GO:0005515
Pumo10g01082 1312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1071 1103 - -
Pumo10g01082 1312 FunFam neurobeachin isoform X1 643 931 - -
Pumo10g01082 1312 Pfam Neurobeachin beta propeller domain 952 1301 IPR046851 -
Pumo10g01082 1312 PANTHER BEIGE/BEACH-RELATED 43 1293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01082 Pumo-Chr10 13952376 13961249 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01082 - - gmx:100801573 2473.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01082 10 13952376 13961249 Pumo10g01082 10 13952376 13961249 ECH