Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01078 ATGGAGCAGGACGATAAGCAAGCAATGATCCGCGATATCGCGTTACAAGTCGTTGTCATCTCCCTCGGTATTTTCAGCTTCCTCTGGATACACGGCCTTCCCCAGCGTCTCTGGGCCAAGCTCACTTACCGGGCCCCAAACCCACGCGCCCTCCAAGCCAAGCGCCACTTCGTCAAAGGCGCGCAGCTCCTCGCCCAAGCCAGAAGGTTCAAAATCGCTTCCACCACAGCCTCCCTCGCCAAACAGGCCCTAGCCGAAGCCGAAAAGGCCATCGCGCTCGACCCCAAGGACGCCGCCTCTCACCTATTGAAGTCCATGGCGCTCGATCTCCAGGGCTTCCGAAGCAACGCCCTCGACGCGCTCGACGCCGCGTTGTCCCCACTCGCTGCGAGCTCCCTCGCCGACGACGAGAGGGGCGACGCGCTTCTGAAGAGGGCGGAGCTGAAGATCAAGATGAGCGAGCGCCGCGTTGACTCGGTGCTCGCGGATTTGACCGAGTCGGTGAAGCTGAGTCCGCGGAACGTGAAAGCGTGGTGCACGTTAGGGGAATGCTACGAAGGGAACAAGATGGGAGAGGAAGCGAAGAAGGCTTATAAGGAGGCTCTCGAGTTGGAGCCACAGTCGAATGTGGCTCAAGAAGCGCTCAGTAGGTTGGGTTCGTGA 663 0.6018 MEQDDKQAMIRDIALQVVVISLGIFSFLWIHGLPQRLWAKLTYRAPNPRALQAKRHFVKGAQLLAQARRFKIASTTASLAKQALAEAEKAIALDPKDAASHLLKSMALDLQGFRSNALDALDAALSPLAASSLADDERGDALLKRAELKIKMSERRVDSVLADLTESVKLSPRNVKAWCTLGECYEGNKMGEEAKKAYKEALELEPQSNVAQEALSRLGS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01078 220 Coils Coil 143 163 - -
Pumo10g01078 220 SMART tpr_5 175 208 IPR019734 GO:0005515
Pumo10g01078 220 Pfam Tetratricopeptide repeat 175 207 IPR001440 GO:0005515
Pumo10g01078 220 SUPERFAMILY TPR-like 81 208 IPR011990 GO:0005515
Pumo10g01078 220 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 6 81 212 - -
Pumo10g01078 220 Gene3D Tetratricopeptide repeat domain 72 153 IPR011990 GO:0005515
Pumo10g01078 220 Gene3D Tetratricopeptide repeat domain 154 219 IPR011990 GO:0005515
Pumo10g01078 220 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01078 Pumo-Chr10 13902876 13904616 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01078 - - gmx:100799725 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01078 10 13902876 13904616 Pumo10g01078 10 13902876 13904616 ECH