Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01077 ATGCATGGTCGGCCTCGCAAAGCGTTGAAGCAAGAAGATGAAGTTGCTTTATCAGCCAAAGCTGAAAAGCTTCGTTCTCTCCAAGCTCAGTTCCTCGCTAATCACCACAATAACATGTTGCCTCTTCTTCCTTCAACTTTTTTTCTCTCTTTTTCTTCTCCTTCGATTAATTCTAATTGCACAAATCTGGTTGGTTGCAGATATAGCAAGGAAGCGCTAGATGTGAGCGCGAAGCTTCTAGAAGTTAATCCGGAGTGCTACACAGCTTGGAATTACAGAAAGCTCGCGGTTCAGCATCTTCTCTCTAACTCCGATTCCGATCCCCACTCTATATTCAGTGACGAGCTCAAACTCGTGGAGATTGCGCTGAGGAAGAATTTCAAGTCTTACGGCGCCTGGCATCATAGAAAATGGGTACTCAGCAAGGGGCATTCCTCCATAGACAACGAAATGCGTCTTCTGAATGGTTTTCAGAAGATGGATCCTCGGAATTTTCACGCCTGGAATTACCGAAGGTTTGTTGCTGAACTGATGAAACGATCAGATGAGGATGAGTTGAAATACACAGAGGAAGTGATAGGGGCTAATTTCAGTAATTACTCTGCATGGCACAATCGTAGTGTGCTTTTGTCTAATTTGCTGAAAAGAAAGGCTGAAGGATATTTCCCTAAAGAAAAAGTTTTGGAAGAGGAGTTTGAGCATGTCCACAATGCTATTTTTACCGATCCAGATGATCAGAGTGGCTGGTTTTATCATCTTTGGCTTATTGATCAAACAGTGAAAACTGATGCTCCTCTCCTTGTTTCATCTTGGCCTTCCCATGGATCTAATATAACTCTAATTGGGGATAACGACCTTCATGGTTGTGGTTTGTCTCTACTGAATGGTACACTATCAGACACTGGAACACTTCCTATCATTCTTTATTTCAATCAAGCTGTCGAAGGAATAAACTCATCCACAGTGGCTATTAAATCTGAACTTTTAAAGGAGGAACTTGTGTGGAAACCACTTTCCATGAACAATTCAAATACTGCTCAGGTTTGGGTTGTATATCTAAACCTTGGAAATATGGAGCTTCAACCATCAAAAACTTACTCTGTAGAGATCAACATTGGATATTCTAAGGGTATTGTATCTTCAAATGGAAATCACTATGGTGATCCTTCCCAAATTTCCTTTAAAGTGTTTGTACAGACTGCATCTACTGAACCTACTGAAGGACAGGGTGTGAACAGGACTACATGGAAGGATACAAATTTCCAAAAAATTGATCATTTTCAGGAATCAGATTCCATTCTTTCTGCTGATCAAAATCACCATATCCCAACAACTTCCAATTGGTCCACTGAGGAAATTGGTGAAGAAATAACTAAATTTCGAGACTTATTGTCAGAGTATGACTGTAAAATTGGAAGGCTTACACTTGCAAGACTTTTGGCTGCTCTTGATTTGTTATCATCTCAACATGATGGAAGAAAATCTAACACTGAAGAAGTTCTTCAACTTTACACTGATCTGATGAAGTTGGATCCACCACATTCTCTATGCTACAAAGACGAGCATAGTCTAATATCACTAAAGCAGATAACTTCCACTAGGGACTCTTTACTACCATACTGCCACTACTATAAAGATGCAACAGAAACAAATACTGGTTATGTCTGTCTACGATTACAAAATCTATCATTGTCACGGATGGGATCCATTGAGAATTTATTGTGGGTGCAAATGCTAGACCTTAGCCACAACGAACTTCGATCCATTGAAGGGTTGGAGGCCATGCAACTTCTATCTTGCTTAAATCTGAGTCATAATAAATTTGGTAGTTTTACTGCTTTGGGGCCTCTCAGATTGCTTAAGCCACTTAAAGTGTTGGACATCTCATACAATGAGTTAGGCTCTCACTCAATTGACACAATGAGATACTTATGCTCTTCTCCCGTAGCTCATACTGAAGAATTTGCCTGGGACCGTTTTGAAATCCTCACTGGCAGCATTGATGCCACAAAATTTTGGGAAGCTTTCTTAATATTTGGAAGCTTGACATTGACAGAGTTAAACATAACAGGGAATGCAGTAGCTGATGAGAACTTCAGGTCATTTCTTGTCAAAGTTTTGCCAACACTCAAGTGGCTAGATGATGAAGAATTATCTTGA 2160 0.4005 MHGRPRKALKQEDEVALSAKAEKLRSLQAQFLANHHNNMLPLLPSTFFLSFSSPSINSNCTNLVGCRYSKEALDVSAKLLEVNPECYTAWNYRKLAVQHLLSNSDSDPHSIFSDELKLVEIALRKNFKSYGAWHHRKWVLSKGHSSIDNEMRLLNGFQKMDPRNFHAWNYRRFVAELMKRSDEDELKYTEEVIGANFSNYSAWHNRSVLLSNLLKRKAEGYFPKEKVLEEEFEHVHNAIFTDPDDQSGWFYHLWLIDQTVKTDAPLLVSSWPSHGSNITLIGDNDLHGCGLSLLNGTLSDTGTLPIILYFNQAVEGINSSTVAIKSELLKEELVWKPLSMNNSNTAQVWVVYLNLGNMELQPSKTYSVEINIGYSKGIVSSNGNHYGDPSQISFKVFVQTASTEPTEGQGVNRTTWKDTNFQKIDHFQESDSILSADQNHHIPTTSNWSTEEIGEEITKFRDLLSEYDCKIGRLTLARLLAALDLLSSQHDGRKSNTEEVLQLYTDLMKLDPPHSLCYKDEHSLISLKQITSTRDSLLPYCHYYKDATETNTGYVCLRLQNLSLSRMGSIENLLWVQMLDLSHNELRSIEGLEAMQLLSCLNLSHNKFGSFTALGPLRLLKPLKVLDISYNELGSHSIDTMRYLCSSPVAHTEEFAWDRFEILTGSIDATKFWEAFLIFGSLTLTELNITGNAVADENFRSFLVKVLPTLKWLDDEELS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01077 719 Pfam Protein prenyltransferase alpha subunit repeat 148 176 IPR002088 GO:0008318|GO:0018342
Pumo10g01077 719 Pfam Protein prenyltransferase alpha subunit repeat 183 213 IPR002088 GO:0008318|GO:0018342
Pumo10g01077 719 Pfam Protein prenyltransferase alpha subunit repeat 228 258 IPR002088 GO:0008318|GO:0018342
Pumo10g01077 719 Pfam Protein prenyltransferase alpha subunit repeat 70 100 IPR002088 GO:0008318|GO:0018342
Pumo10g01077 719 Pfam Protein prenyltransferase alpha subunit repeat 113 141 IPR002088 GO:0008318|GO:0018342
Pumo10g01077 719 FunFam Rab geranylgeranyl transferase like protein 534 719 - -
Pumo10g01077 719 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 227 261 IPR002088 GO:0008318|GO:0018342
Pumo10g01077 719 Gene3D Ribonuclease Inhibitor 665 719 IPR032675 -
Pumo10g01077 719 Pfam Leucine Rich repeat 681 697 IPR001611 GO:0005515
Pumo10g01077 719 ProSiteProfiles Leucine-rich repeat profile. 575 596 IPR001611 GO:0005515
Pumo10g01077 719 Gene3D Ribonuclease Inhibitor 521 655 IPR032675 -
Pumo10g01077 719 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 68 102 IPR002088 GO:0008318|GO:0018342
Pumo10g01077 719 SUPERFAMILY L domain-like 551 634 - -
Pumo10g01077 719 Gene3D Protein prenylyltransferase 1 271 - -
Pumo10g01077 719 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 2 528 - -
Pumo10g01077 719 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 181 215 IPR002088 GO:0008318|GO:0018342
Pumo10g01077 719 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 111 145 IPR002088 GO:0008318|GO:0018342
Pumo10g01077 719 FunFam Geranylgeranyl transferase type-2 subunit alpha 63 267 - -
Pumo10g01077 719 SUPERFAMILY Protein prenylyltransferase 65 522 - -
Pumo10g01077 719 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 146 180 IPR002088 GO:0008318|GO:0018342
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01077 Pumo-Chr10 13897176 13902442 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01077 K14050 - gmx:100807900 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01077 10 13897176 13902442 Pumo10g01077 10 13897176 13902442 ECH