Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01076 ATGCCCACCAACGAAGACTTCCAAGGTGTTTCAAATTGCTATGTGTTCAAGAGCCGATTGCAGGAGTATGCGCAGAAGGCAGGGCTGCCAACGCCTGTCTATGAAACTATTAAGGAAGGGCCTTCCCATGAACCTTCTTTCAGGTCGACAGTGATAGTGAATGATGTTCGGTATGATTCTTTGCCTGGATTTTTCAACCGCAAGGCAGCAGAGCAGTCGGCTGCAGAAGTTGCTCTGGTGGAGTTGGCCAAATCCAATGTAGTTAATCAATCCATCACTCAACCAGTTCATGAAACAGGATTATGCAAGAATTTACTTCAGGAATATGCTCAGAAAATGAACTATGCAATGCCTATGTATCAGTGCAAAAAGGATGAAACACCAGGTCGAGCATCAGTATTTTCATGTACGGTTGACATTGGGGGGATTCTCTATATTGGGGGAGCAGCAAAAACAAAGAAGGAAGCAGAGATAAAAGCTGCTAGAACTGCTTTATTAGCTATCCAGTCAAGTGCAGCTCATGCTTCCCAAAACCAGGTTGGTCATCCACAGTTGACAGTGCTTCCATGCAGAAAAAGGGCAACGGAATCTGTTGCCGTAGCTGATGAGAATTCAAATCCTCCAAAGCCTAAGAAAGCACGGTTTAAAAGGAAATCTTCTAAGAGGAAACCCTCTAGAGATAAGATAGGCCAAATTCATACTGAAAACTTGGGCATTGGAGCAAATATCAATCATGAGGTAGAAACACATGCAAGTGCTAATGGTGAATCTGGGGTCCTCGAAAAGAAATCCGAAACATTCACCTCAGAAGCCATGAAGAATTTTGAGAATGGAATATCAGTTAACTATCACGAGAAAGAAACATTGGCTGGGGAGGGTTCTTTTGCTGTGAATAACCAGGAAGGGATTTTTGAAAATGGGAAGTCAACAGAATTTTATTCCAAGGAAAACAATCTTGGGACTGTTGTTACAGAACTATCTTCTGTGTCTAACGGAGGCATACCAGAAACAAGTGTGGAGATGAACGGAGGCATACCAGAAACAAGTGTGGAGATGAACGGAGGCATACCAGAAACAAGTGTGGAGATGAACAAACAACAATTCAATGGAGAAATGGTTTCTGACCATTGTGTTGTGGGGGGTTGA 1146 0.4302 MPTNEDFQGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALVELAKSNVVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSAAHASQNQVGHPQLTVLPCRKRATESVAVADENSNPPKPKKARFKRKSSKRKPSRDKIGQIHTENLGIGANINHEVETHASANGESGVLEKKSETFTSEAMKNFENGISVNYHEKETLAGEGSFAVNNQEGIFENGKSTEFYSKENNLGTVVTELSSVSNGGIPETSVEMNGGIPETSVEMNGGIPETSVEMNKQQFNGEMVSDHCVVGG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01076 381 Gene3D - 16 97 - -
Pumo10g01076 381 FunFam Double-stranded RNA-binding protein 1 95 170 - -
Pumo10g01076 381 SUPERFAMILY dsRNA-binding domain-like 103 170 - -
Pumo10g01076 381 SUPERFAMILY dsRNA-binding domain-like 15 84 - -
Pumo10g01076 381 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 101 170 IPR014720 -
Pumo10g01076 381 Gene3D - 98 170 - -
Pumo10g01076 381 Pfam Double-stranded RNA binding motif 17 79 IPR014720 -
Pumo10g01076 381 Pfam Double-stranded RNA binding motif 103 166 IPR014720 -
Pumo10g01076 381 CDD DSRM_AtDRB-like_rpt1 15 83 IPR044450 GO:0003725
Pumo10g01076 381 PANTHER RIBONUCLEASE III 13 229 IPR011907 GO:0003723|GO:0004525|GO:0006364
Pumo10g01076 381 MobiDBLite consensus disorder prediction 198 231 - -
Pumo10g01076 381 SMART DRBM_3 16 83 IPR014720 -
Pumo10g01076 381 SMART DRBM_3 102 169 IPR014720 -
Pumo10g01076 381 FunFam double-stranded RNA-binding protein 1 13 89 - -
Pumo10g01076 381 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 15 84 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01076 Pumo-Chr10 13891682 13895602 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01076 - - gmx:100782651 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01076 10 13891682 13895602 Pumo10g01076 10 13891682 13895602 ECH