Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01056 ATGCGTTCATTGGTGCCGAAGGGAAGAAGCAGAAGCATGACATGTCTATGCCTTACCCATTCACTCACTCAAACCCATAACACCCCACACGCCACCACCTTCTCTTCTTCTCTCCATAATAACCGTAACTCCCTCTTTCAATTATTCTCCGTAAGTAACCAATTCCCTCTTCTCTCTCAAATCTTTGCGTTTCTATATCGCGTTTTGTTTCAGGGTATTCTCCGACCTCGAATTCGAGCATTTTCCACCAACTTCAGGGGCGGGCCCACACCAACTGCTGCTTCTTCTTCTTCTGTCCTCGCCCAAAGCATGGCCAATTTCGACGCTGATTCCGTCACTTACCTGACGCAGCGAGAAGCCGCTGAGATCGACGAGACACTCATGGGTCCACTTGGCTTCAACGTCGATCAGCTCATGGAATTGGCTGGTTTGAGCGTCGCCACTTCCATTTCTGAGGTTTACAAACCAAGTGAGTATAGTCGTGTTCTTACTATTTGTGGTCCTGGTAACAATGGTGGTGATGGTTTGGTAGCTGCTCGGCACCTGCATCACTTTGGTTATAAGCCCTTCACCTGCTACCCTAAGCGTACCCCCAAGCCTCTCTATGTTGGATTGGTTACTCAGCTTGAAGCATTGTCAATCCCATTCTTGTCAGTGGAAGAACTATCGTCAGATCTTTCAAATGACTTTGACATTGTCATAGATGCAATGTTTGGATTCTCATTTCATGGTTCTCCAAGGCCTCCTTTTGATGATTTGATCCAGAGACTTGTCTCTTTACATAATAATAATAATCAAATTGGCCAAAAAAGATCTGTTATTGTCTCTGTAGATGTTCCCTCTGGGTGGCATGTTGAAGAGGGAGATGTTGATGGTACAGGCATTAAACCTGATATGTTGGTTTCTTTGACAGCCCCAAAATTAGGTGCAAAGAAGTTTGGTGGTCCTCACCACTTTCTAGGAGGTAGATTTGTCCCACCTGCTATTGCAGAAAAATATAAGCTTATACTTCCACCATATCCTGGAACATCCATGTGTGTTCGAATTGGAAAGCCTCCACAAATTGATATCTCAGCTCTAAGAGAGAACTATATCTCTCCAGAATTTCTTGAAGAGCAGGTGGAGGCTGACCCTATTAATCAGTTTCACAAATGGTTTGATGATGCGTTGGCTGCTGGTTTGAAGGAACCAAATGCTATGGCCTTGTCAACTGTAGGGAAGGACGGAAAACCCTCATCACGAATGGTATTGCTAAAAGGCTTGGATAAGGATGGATTTGTGTGGTACACAAACTATGAAAGTCGAAAGGCACGTGAATTATCTGAAAATCCACGTGCATCGCTTCTTTTTTACTGGGATGGTTTAAACCGGCAGGTACGGGTGGAAGGGCCTGTTCAGAAAGTCTCGGATGAGGAATCAGAGCAGTATTTCCATAGTCGTCCTAGAGGAAGTCAGATTGGAGCAATAGTCAGCAAGCAGAGTACTGTAGTGCCAGGTAGGCATGTTCTTTATCAGGAGTACAAAGAGCTGGAACAAAAATACGCTGATGGAAGTTTGATCCCTAAACCGAAGAACTGGGGAGGATATAGGCTAACACCACAACTTTTCGAGTTTTGGCAAGGACAGAAATCTCGCTTGCATGACAGGTTGCAATATACTCCCCATGAGATCAATGGACAGCGGCTGTGGAAGGTTGAGCGGTTGGCTCCATGA 1713 0.4513 MRSLVPKGRSRSMTCLCLTHSLTQTHNTPHATTFSSSLHNNRNSLFQLFSVSNQFPLLSQIFAFLYRVLFQGILRPRIRAFSTNFRGGPTPTAASSSSVLAQSMANFDADSVTYLTQREAAEIDETLMGPLGFNVDQLMELAGLSVATSISEVYKPSEYSRVLTICGPGNNGGDGLVAARHLHHFGYKPFTCYPKRTPKPLYVGLVTQLEALSIPFLSVEELSSDLSNDFDIVIDAMFGFSFHGSPRPPFDDLIQRLVSLHNNNNQIGQKRSVIVSVDVPSGWHVEEGDVDGTGIKPDMLVSLTAPKLGAKKFGGPHHFLGGRFVPPAIAEKYKLILPPYPGTSMCVRIGKPPQIDISALRENYISPEFLEEQVEADPINQFHKWFDDALAAGLKEPNAMALSTVGKDGKPSSRMVLLKGLDKDGFVWYTNYESRKARELSENPRASLLFYWDGLNRQVRVEGPVQKVSDEESEQYFHSRPRGSQIGAIVSKQSTVVPGRHVLYQEYKELEQKYADGSLIPKPKNWGGYRLTPQLFEFWQGQKSRLHDRLQYTPHEINGQRLWKVERLAP 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01056 570 Pfam Pyridoxamine 5'-phosphate oxidase 386 472 IPR011576 -
Pumo10g01056 570 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 363 570 IPR000659 GO:0004733|GO:0008615|GO:0010181
Pumo10g01056 570 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 536 549 IPR019740 GO:0016638
Pumo10g01056 570 PANTHER PYRIDOXINE-5-PHOSPHATE OXIDASE 356 570 IPR000659 GO:0004733|GO:0008615|GO:0010181
Pumo10g01056 570 NCBIfam pyridoxamine 5'-phosphate oxidase 377 570 IPR000659 GO:0004733|GO:0008615|GO:0010181
Pumo10g01056 570 Gene3D - 364 562 IPR012349 -
Pumo10g01056 570 Pfam YjeF-related protein N-terminus 136 309 IPR004443 -
Pumo10g01056 570 NCBIfam NAD(P)H-hydrate epimerase 117 312 IPR004443 -
Pumo10g01056 570 SUPERFAMILY YjeF N-terminal domain-like 113 344 IPR036652 -
Pumo10g01056 570 SUPERFAMILY FMN-binding split barrel 371 570 - -
Pumo10g01056 570 Gene3D - 111 354 IPR036652 -
Pumo10g01056 570 ProSiteProfiles YjeF N-terminal domain profile. 120 337 IPR004443 -
Pumo10g01056 570 FunFam NAD(P)H-hydrate epimerase 371 570 - -
Pumo10g01056 570 FunFam NAD(P)H-hydrate epimerase 112 354 - -
Pumo10g01056 570 Hamap NAD(P)H-hydrate epimerase [nnrE]. 116 352 IPR004443 -
Pumo10g01056 570 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 526 570 IPR019576 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01056 K23998 - gmx:100795497 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01056 10 13686564 13692654 Pumo10g01056 10 13686564 13692654 ECH