Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01049 ATGGACTCCGTTCCGTTTCGCGATGGCAACATACACACCATTCTCGACTCCCGTTATCTCCACTCTCCACTGGATGTTAATCATAGTTTGCACACTCATTCCTCGTTGATTCGGAGGCTTTCTCAAGAAAGCGAGTTAGAGGGTCACCTTGGCTGTGTCAATGCGGTGGCTTGGAATTCCAAAGGTTCGTTGCTAATATCAGGATCAGATGATACACGGATCAATATTTGGAGCTATTCTGGCCGGAAACTTTTACATTCAATAGACACAGGACATACTGCAAATATATTCTGTACTAAGTTTATACCAGAAACTTCTGATGAGCTTGTAGCCTCTGGAGCTGGAGATGCTGAAGTCCGGTTATTTAATTTGTCTCGCTTAAGTGGGAGTGGATCTAGTGACAGTGCCATCGTTGCTCCATCTGCACTTTACCAATGCCACACTCGAAGAGTCAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTAGTATGGAGTGCTAGTGAAGATGGGACCCTAAGACAACATGATTTTCGGGAAGGTACCTCTTGTCCTCCAGCTGGATCTTCGCACCAAGAATGTCGAAATATTCTTCTTGACTTACGAAGTGGATCTAAAAGGTCGCTTGCTGATCCTCCTAAACAAGTCCTTTCTTTAAAATCTTGTGATATTAGTTCAACTAGACCACATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGCTTATATGATAGAAGGATGCTGCCACCTCTTAGCTCATGTCGGAAAAGAATGTCTCCACCTCCTTGTGTTAATTATTTCTGTCCCATGCATCTTTCTGATCGTGGACATCCAAGCTTGCATCTAACTCATGTTACATTCAGTCCTGATGGACACGAGGTTCTCCTCAGCTATAGTGGAGAGCATGTTTACTTGATGAATGTAAATCATGCAGGAGTGAATGAGATGCAATATACTTCAGGAGATGTATCAAAGCTGATGACTTACTCTCTGACAATTAATGTGACAGAGATGCAGCCTTTTGTATCTAATGGATTTCCTATTAAAAAGAACATCGCTGCAACGCTTGACAAGTGCAGGAAACTAATAAAATATGCTAAGAAATCATTGGACAATGGGAAACCCTATTATGGAATTGAGGCATGTAATGAGGTTTTGAATGGCTATAGCCATATTATTGGGCCTGAACTGAAACATGAATGCTTGTGTACTCGTGCTGCACTATTGGTCAAGAGGAAGTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCTATGCTGCTAGAAAAATTGATAATTCCTCTTATAAAGCACTTTACTATATGTCAGAAGCATTGTCACAGTTGGGTAGACATGAAGATGCTTTGGAGTTTGCTGTTGCTTCCCATTCATTGGCCCCTTCCAAATCTGAAGTTGCAGAAAGAGTGGAGAATGTGAAGAGGGACATTGCTTTAGCTGAAGCTGAAAAAAATAGTAAGACCAATGATGGGGCATCAAGGTTTGATAGTCGGGGTGGAAGAATATTATCATTAAGTGACATACTCTATCGTCCTGAGGCTAATGGTGATGCTCCACAAGATGGTCCAAGATCAGAGAGGGATGATTCTGATTACGATGAGGAATTGGAGTTGGACTTTGAAACATCAATATCTGGTGATGAGGGACATGATTTTGAATCAAATATTCTTCATGGAAGTTTAAATCTTAGAATTCATCGGAGAGGTGACTCCAGAGACAATGCTGGTGCAAGTGGCTCATGCGAATCACCTTCATCATCGTCACAGAACAGTAGAACATCTTATCAGCCTGAACCAGCTGTTGATATGAAACAAAGATTTGTTGGCCACTGCAATATTGGGACTGACATAAAACAAGCCAATTTTCTTGGTCAAAGAGGTGAATATGTTGCCAGTGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGTACGGGTAGACTCCTAAAAATGCTGAATGGTGATGAATCTGTTGTAAATTGTGTACAATGCCATCCATTTGATTTTGTTGTTGCAACCAGTGGGATTGATAGCACAATAAAGATATGGACTCCAAATGCTCCTGTTCCATCTTCTGTAGCTGGTGGTTCAGCAGGACCAGAAACTGGTGATGTGTTGGTTGCTATGGAGAGCAATCAACAAAAAATATCCCGTAACCATAATTCTATCTTACCATTTGGGCTTTTGGAACCATTTAGAATGCAGGAGTTTCCTGAAGGGTCGTTACGCTTGCGTCCATTTGAATGTGCTCAAAGCTAA 2283 0.417 MDSVPFRDGNIHTILDSRYLHSPLDVNHSLHTHSSLIRRLSQESELEGHLGCVNAVAWNSKGSLLISGSDDTRINIWSYSGRKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVRLFNLSRLSGSGSSDSAIVAPSALYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNHAGVNEMQYTSGDVSKLMTYSLTINVTEMQPFVSNGFPIKKNIAATLDKCRKLIKYAKKSLDNGKPYYGIEACNEVLNGYSHIIGPELKHECLCTRAALLVKRKWKNDAHMAIRDCYAARKIDNSSYKALYYMSEALSQLGRHEDALEFAVASHSLAPSKSEVAERVENVKRDIALAEAEKNSKTNDGASRFDSRGGRILSLSDILYRPEANGDAPQDGPRSERDDSDYDEELELDFETSISGDEGHDFESNILHGSLNLRIHRRGDSRDNAGASGSCESPSSSSQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQANFLGQRGEYVASGSDDGRWFIWEKRTGRLLKMLNGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPNAPVPSSVAGGSAGPETGDVLVAMESNQQKISRNHNSILPFGLLEPFRMQEFPEGSLRLRPFECAQS 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01049 760 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Pumo10g01049 760 Coils Coil 470 497 - -
Pumo10g01049 760 Gene3D - 28 130 IPR015943 GO:0005515
Pumo10g01049 760 Gene3D - 566 696 IPR015943 GO:0005515
Pumo10g01049 760 MobiDBLite consensus disorder prediction 583 604 - -
Pumo10g01049 760 Gene3D - 131 332 IPR015943 GO:0005515
Pumo10g01049 760 SUPERFAMILY TPR-like 365 473 IPR011990 GO:0005515
Pumo10g01049 760 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Pumo10g01049 760 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515
Pumo10g01049 760 Pfam WD domain, G-beta repeat 655 691 IPR001680 GO:0005515
Pumo10g01049 760 SUPERFAMILY WD40 repeat-like 40 691 IPR036322 GO:0005515
Pumo10g01049 760 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 11 728 IPR045151 -
Pumo10g01049 760 FunFam Transducin family protein / WD-40 repeat family protein 561 733 - -
Pumo10g01049 760 SMART WD40_4 81 123 IPR001680 GO:0005515
Pumo10g01049 760 SMART WD40_4 266 308 IPR001680 GO:0005515
Pumo10g01049 760 SMART WD40_4 137 177 IPR001680 GO:0005515
Pumo10g01049 760 SMART WD40_4 607 650 IPR001680 GO:0005515
Pumo10g01049 760 SMART WD40_4 653 692 IPR001680 GO:0005515
Pumo10g01049 760 SMART WD40_4 39 78 IPR001680 GO:0005515
Pumo10g01049 760 SMART WD40_4 212 245 IPR001680 GO:0005515
Pumo10g01049 760 MobiDBLite consensus disorder prediction 516 539 - -
Pumo10g01049 760 Gene3D Tetratricopeptide repeat domain 349 484 IPR011990 GO:0005515
Pumo10g01049 760 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 691 IPR001680 GO:0005515
Pumo10g01049 760 MobiDBLite consensus disorder prediction 576 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01049 Pumo-Chr10 13613995 13624405 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01049 K11807 - gmx:100793917 1391.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01049 10 13613995 13624405 Pumo10g01049 10 13613995 13624405 ECH