Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01033 ATGCGTGTGACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGGTGGTTTGTGTGGTGGTGCCGGTGATCGGCTTCGTGATTTGGCGTAAATGGCAGGTTTCCGAGGCTAGGAAGGAGGAGATCAAGAGGCTTTTGGTTTTGGCCGCGGAGGAAACTGCCAGAGCGGAGGAAGAAGCGACCTATGAGTACGGCACGGCGGTTTCCGCCTCTCGGAGCAATCAATGCGCCGTGTGCTATTTTCCCGCCACCGCGCGCTGCGCTCAGTGCAAATCGGTTCGCTACTGTTCTTTTGAGTGCCAAACTGTTCATTGGCGTCAAGGTCACAAGTTAGAATGCCGTCCTCCCAGCACAACTCACTGGAGTGATGATGTGACAAGTGATCTTGGCAACAAAGTAGTAGAGCAAGGCTACTCTGGAATCCATGTTGAGAAGTCTGAAAGTGAAGACAAAGAATGTAAAATAGCCTCTGAAAAGCCCCCAATTTCTGATGTCTGCTTTTCTCCAAAAGTTTCATCTGGAAAGGATGAAAATAGTAGAGTTGAGTCTCTTGCAGAGGGAAATATAACAGATTCTAATTCTGAATTGTCCAGTAACTCATTTTCTGGATTCTCTGCTTCCACTGGTTCTAGTGATTCATCTGATGATTCCTCTGTCTGTGAGAGCATCATCTCAAATGAGCATGATGGATCAGAGGGACATACTTTTGTTGATCCTACCCTTGACATTCCTGATAACACTAGTGATGATAGCATGGGTGTAACCATGTCTTCTTCACCAAAGTTTGCTACTTTGGTTGATTCAGTAGATGATTTTTCTACAATGCATAAATTAAATGGTTCAAGTATGTGGAAGGGGAAAACAATTGAGCCTTCTACAGTTTTTTCGGGATTCTGGGATAAAGCTCTTGATTCAAGAGGGATTAAAGATGATACCAAGAATGACACTCATCCATCCTGTTCTGATGAATCCACAGGCAAAAAGACTGTTTCTGAATCTTCATTTCACTTTTCATTCAGTACCATGCCTCCTTTGCATGTACGAGATACCAAGACAAATGATTCTGTATCTGATGATGCTTTTCCAAACTGTATTGGGAACAATATGGCATGTTCAGGATCAGCATCGTCTGAGAATGATAACATGAATTCTTCAAAGGGGAGGAATTTTTCGTTCATCAACAGTAAAGTTTCCAATGTTAGGAGTTATGTTACTCCAAGTGGTTCTGAATCTGATCAATTGGAATCTAAAGACAGCTCTGGGCCACCTTTATCATCTTTCTCCCCTCAATCCTCCAGTGTTGGCAAAGATTCAGTATGCCCAGATGCTTTGAGCTTCCATAACTTGCAATCAACTGGCTCTATGGTATCCAATCATGTTGTGGAAAACCGTGGCAGCACCTTGAAGTCCACTAAAATTAGATGCCTGACGCGTGAACTTGCTGATTCTGATTTAGCTTCAGGAACTGAAGAGCATTCTCACTCCAGTACAAAACATGGGAATAATGACATTGAATCTGGCACTCGAGCTGTCACTTTCTCTCAGGTTGCTAGCTGTTCTGCAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTGAAAGTTGTTGATCAGTTTAGAGGATCAAATTTGTCAAAGCACTTTCCATTAGCTGTTGGGAGTGATATTGCTGGAAGACATAATGACAAGAGTTTTTTCCCTTATGAATTGTTTGTCAAGCTTTATAACTTGAACAAGGTGGAGTTATGCCCATTTGGTCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTGTACTTCAGTGCTTAGCATTTACACCACCTCTGACTGCTTATTTGCTTCAAGGATTACATTCGAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGCGAATTTGAAAGATTGATATTGAATTCAAAGGACACAAAATCTGCGGTGTCTCCTATGGGCATAATCTCCCATCTACAGAATATTGGGAGTCAGCTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGCATCGGGCTCATTAGAAGAGGACACTACTTTAATGGGTCAAACATTTGGAGGTTACCTTCGGTCAAAGATAAAATGCATGAGATGTGGAGGGAAGTCTGAGCGTCAGGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGAGATAACAACCCTGGTGGAGGCCCTTCGACGATTTACAAGCACTGAGACTTTGGATGGGGAAAACAAATACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCGAATGTTCTTACAGTTGCATTAAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAGCCCATTCAATTTCCTGAAATACTTAACTTGGCACCTTTCATGAGTGGGACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTTCACTTAGATGTCATGAATGCTGCCTTTTCAGGTCACTATGTGTGCTATGTGAAGAATATCCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTGACAGCTGTTGAATTGGATAGAGTCTTGACAAAAGGAGCATATATGCTTTTCTATGCAAGGTGCTCGCCAAGGGCCCCAAGATTAATTAGGAACAGAATACTTGTCCCCAGATTCAAAAAGTAA 2727 0.4221 MRVTGDLGFSSLVLVVVCVVVPVIGFVIWRKWQVSEARKEEIKRLLVLAAEETARAEEEATYEYGTAVSASRSNQCAVCYFPATARCAQCKSVRYCSFECQTVHWRQGHKLECRPPSTTHWSDDVTSDLGNKVVEQGYSGIHVEKSESEDKECKIASEKPPISDVCFSPKVSSGKDENSRVESLAEGNITDSNSELSSNSFSGFSASTGSSDSSDDSSVCESIISNEHDGSEGHTFVDPTLDIPDNTSDDSMGVTMSSSPKFATLVDSVDDFSTMHKLNGSSMWKGKTIEPSTVFSGFWDKALDSRGIKDDTKNDTHPSCSDESTGKKTVSESSFHFSFSTMPPLHVRDTKTNDSVSDDAFPNCIGNNMACSGSASSENDNMNSSKGRNFSFINSKVSNVRSYVTPSGSESDQLESKDSSGPPLSSFSPQSSSVGKDSVCPDALSFHNLQSTGSMVSNHVVENRGSTLKSTKIRCLTRELADSDLASGTEEHSHSSTKHGNNDIESGTRAVTFSQVASCSANSKSGLKTSVLKVVDQFRGSNLSKHFPLAVGSDIAGRHNDKSFFPYELFVKLYNLNKVELCPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFERLILNSKDTKSAVSPMGIISHLQNIGSQLGNGREEDAHEFLRHVIDTMQSVCLMEAGVNASGSLEEDTTLMGQTFGGYLRSKIKCMRCGGKSERQERMMDLTVEIEGEITTLVEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILNLAPFMSGTSDKSPIYRLYGVVVHLDVMNAAFSGHYVCYVKNIQNKWFKVDDSVVTAVELDRVLTKGAYMLFYARCSPRAPRLIRNRILVPRFKK 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01033 908 Gene3D - 63 117 - -
Pumo10g01033 908 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Pumo10g01033 908 MobiDBLite consensus disorder prediction 484 505 - -
Pumo10g01033 908 Gene3D Cysteine proteinases 577 898 - -
Pumo10g01033 908 CDD Peptidase_C19E 585 887 - -
Pumo10g01033 908 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 585 600 IPR018200 GO:0004843|GO:0006511
Pumo10g01033 908 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Pumo10g01033 908 Pfam MYND finger 76 113 IPR002893 -
Pumo10g01033 908 MobiDBLite consensus disorder prediction 402 439 - -
Pumo10g01033 908 MobiDBLite consensus disorder prediction 241 255 - -
Pumo10g01033 908 MobiDBLite consensus disorder prediction 183 225 - -
Pumo10g01033 908 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 584 889 IPR028889 -
Pumo10g01033 908 MobiDBLite consensus disorder prediction 166 255 - -
Pumo10g01033 908 MobiDBLite consensus disorder prediction 306 328 - -
Pumo10g01033 908 SUPERFAMILY Cysteine proteinases 580 891 IPR038765 -
Pumo10g01033 908 MobiDBLite consensus disorder prediction 484 499 - -
Pumo10g01033 908 Coils Coil 39 59 - -
Pumo10g01033 908 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 323 892 - -
Pumo10g01033 908 FunFam Ubiquitin carboxyl-terminal hydrolase 15 67 117 - -
Pumo10g01033 908 Pfam Ubiquitin carboxyl-terminal hydrolase 584 886 IPR001394 GO:0004843|GO:0016579
Pumo10g01033 908 MobiDBLite consensus disorder prediction 306 322 - -
Pumo10g01033 908 FunFam Ubiquitin carboxyl-terminal hydrolase 15 578 897 - -
Pumo10g01033 908 SUPERFAMILY HIT/MYND zinc finger-like 72 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01033 Pumo-Chr10 13396866 13404284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01033 564 893 Miscellaneous Gene Families AT4G31670 50.755 1.66e-118 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01033 K11855 - gmx:100795674 1574.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01033 10 13396866 13404284 Pumo10g01033 10 13396866 13404284 ECH