Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01023 ATGTCGAAAGAGAAATTTTTTTTGATTGCACTTATTTGCAGTTTCGCGTGGTACGTGGTCCCTGGCTACCTATTTACTGCGTTGTCAGTTATTTCGTGGGTGTGTTGGATATTTCCCCATTCAGTAACTGCACAGCAGATTGGATCTGGCCAAGATGGACTTGGTTTGGGTTCCTTTTCCCTTGACTGGACCACCATTGCTTCATTCCTTGGCAATCCACTCGTTTCTCCTTTCTTTGCAACAGCAAACGTCATAGTGGGCTACATATTATTGATCTACCTCATCATACCTGTCGCATATTGGGGACTTAATGTCAACAATGCCAAGAACTTCCCTATATACTCTTCAAGTCTATTCACTGCCAATGGTGTCGAGTACAATGTGACGGCCATTGTGAATGACAAGTTTGAGATAGATATGCTGGCATACGAGAAACAAGGTCGAGTCAACTTGAGTGCCTTCTTTGCTATTAGTTATGGCATTGGTTTTGCTGCCATTGCCTCTTCCCTCACTCATGTGGCCATTTTTAATGGGAGGGAGATATATCAACAATTCCGATCTTCCCGGTCTGGGAAGGAAGACATTCACACAAGATTGATGAAGAAGTACAAGCAAATACCTAGTTGGTGGTTTCATGTGACGCTTTTGGTTTCTTTTGCACTTGCACTTGTACTGTGTATTGCCATGAAAGATCAGATACAAATGCCATGGTGGGGTCTCATCTTTGCAGCTGGGATTGCCCTTACTTTTACTCTCCCCGTTAGCATCATAACGGCCACCACTAATCAGAGTCCAGGTTTGAATATCATTACTGAGTACATCATGGGTGTGATTTTACCTGGCAAACCAATAGCAAACGTTTGCTTCAAGACATATGGGTACATAAGTATGTCACAGGCTGTTTCCTTTCTATCTGATTTCAAGCTAGGACATTACATGAAGATTCCGCCACGGTCCATGTTCATTGTTCAGGTTATAGGGACGCTGATAGCAGGAACCATGGACGTTGGTGTCGCATGGTGGTTGCTGGGTTCAGTCAAGAATATATGCAACCAAGATTTACTGCCCCCAAACAGTCCCTGGACTTGCCCGGGTGACAAAGTTTTCTTTGATGCATCTGTGATCTGGGGTTTGGTTGGCCCAAGGAGAATTTTCGGTACTCTTGGGAATTACCCAAAACTCAATTGGTTCTTCTTAATAGGAGCATTGGGACCACTTGTTATATGGCTGCTCCAGAAAGCCTTTCCCAAACAACATTGGATATCATTAATTCACCTTCCTGTACTTCTTGGAGCAACTGCGAGCATGCCACCAGCTAGCACAGTGAACTTCAATGCATGGATTACTGTTGGCACAATCTTTAACTACTTTGTGTTCAAATATCGTAAGAATTGGTGGCAGCGGTACAATTATGTGCTAGCGGCAGCTATGGACGCTGGATTGGCTTTCATGACGATTCTTCTATACTTTGCAGTTAACGTGGAGGAAAAAAGCATTACATGGTGGGGAAATCCTGATGATCAATGTCCACTTGCCACATGTCCAACAGCGAAGGGTATAGTTTCTGAAGGGTGTCCTGTGTTTTGA 1587 0.4379 MSKEKFFLIALICSFAWYVVPGYLFTALSVISWVCWIFPHSVTAQQIGSGQDGLGLGSFSLDWTTIASFLGNPLVSPFFATANVIVGYILLIYLIIPVAYWGLNVNNAKNFPIYSSSLFTANGVEYNVTAIVNDKFEIDMLAYEKQGRVNLSAFFAISYGIGFAAIASSLTHVAIFNGREIYQQFRSSRSGKEDIHTRLMKKYKQIPSWWFHVTLLVSFALALVLCIAMKDQIQMPWWGLIFAAGIALTFTLPVSIITATTNQSPGLNIITEYIMGVILPGKPIANVCFKTYGYISMSQAVSFLSDFKLGHYMKIPPRSMFIVQVIGTLIAGTMDVGVAWWLLGSVKNICNQDLLPPNSPWTCPGDKVFFDASVIWGLVGPRRIFGTLGNYPKLNWFFLIGALGPLVIWLLQKAFPKQHWISLIHLPVLLGATASMPPASTVNFNAWITVGTIFNYFVFKYRKNWWQRYNYVLAAAMDAGLAFMTILLYFAVNVEEKSITWWGNPDDQCPLATCPTAKGIVSEGCPVF 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01023 528 NCBIfam OPT family oligopeptide transporter 16 494 IPR004813 GO:0035673
Pumo10g01023 528 Pfam OPT oligopeptide transporter protein 1 492 IPR004813 GO:0035673
Pumo10g01023 528 NCBIfam small oligopeptide transporter, OPT family 1 496 IPR004648 GO:0055085
Pumo10g01023 528 PANTHER ISP4 LIKE PROTEIN 1 527 IPR004648 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01023 Pumo-Chr10 13288521 13290558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01023 1 527 Organic Solute Cotransporters AT5G64410 69.070 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01023 - - gmx:100785973 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01023 10 13288521 13290558 Pumo10g01023 10 13288521 13290558 ECH