Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01001 ATGAGAGAGTGCATTTCAATCCACATTGGTCAGGCCGGTATCCAGGTCGGAAACGCCTGTTGGGAACTCTATTGCCTTGAACACGGCATTCAGCCCGATGGACAGATGCCGAGTGACAAGACCGTTGGCGGAGGCGACGACGCCTTCAACACATTCTTCAGCGAGACCGGCGCCGGAAAGCACGTGCCACGCGCCGTCTTCGTGGATCTGGAGCCCACCGTGATCGACGAGGTCCGAACCGGCGCTTACCGGCAGCTCTTCCACCCGGAGCAGCTCATCAGCGGCAAGGAAGACGCCGCCAACAACTTCGCGCGTGGCCACTACACCATCGGAAAAGAGATCGTGGATCTCTGCCTCGACAGGATCCGAAAGCTCGCCGACAACTGCACCGGTCTCCAGGGCTTCCTTGTCTTCAACGCCGTCGGTGGCGGTACCGGTTCCGGCTTGGGCTCGCTTCTGCTGGAGCGTCTCTCCGTTGACTACGGGAAAAAGTCAAAGCTCGGTTTCACCGTTTATCCTTCCCCTCAGGTTTCGACCTCGGTCGTGGAACCCTACAACAGCGTCCTTTCAACGCATTCTCTCCTCGAACACACCGATGTCGCTGTGCTTCTCGACAACGAAGCAATCTACGACATTTGCAGAAGATCCCTCGACATCGAGCGCCCTACCTACACCAACCTTAACCGCCTCGTTTCTCAGGTGATTTCATCCCTCACTGCCTCATTGAGGTTTGATGGAGCACTGAACGTTGATGTGACTGAGTTCCAAACCAACTTGGTTCCTTACCCGAGGATCCACTTCATGCTTTCTTCTTACGCTCCTGTTATCTCTGCTGAGAAAGCTTACCACGAGCAACTTTCCGTTGCTGAGATCACCAACAGTGCTTTTGAGCCATCTTCCATGATGGCAAAGTGTGACCCTCGCCATGGCAAGTACATGGCGTGTTGTTTGATGTATCGCGGTGATGTTGTGCCGAAGGATGTGAATGCTGCAGTGGCCACAATCAAGACCAAGAGAACCATCCAGTTTGTGGATTGGTGCCCCACTGGGTTCAAGTGTGGTATCAACTATCAGCCTCCTACTGTTGTTCCAGGTGGGGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATTTCTAACTCCACCAGTGTGGCTGAAGTGTTCTCCAGGATTGATCATAAGTTTGATCTCATGTATGCTAAGAGGGCCTTCGTGCACTGGTATGTTGGTGAAGGTATGGAAGAGGGTGAGTTCTCAGAGGCTCGTGAGGACCTTGCTGCTCTTGAGAAGGATTATGAGGAGGTTGGTGCTGAGTCTGGTGATGGAGATGATGATGGTGAAGGAGATGATGATTATTAG 1359 0.5342 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGDGDDDGEGDDDY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01001 452 Pfam Tubulin C-terminal domain 263 392 IPR018316 -
Pumo10g01001 452 MobiDBLite consensus disorder prediction 431 452 - -
Pumo10g01001 452 MobiDBLite consensus disorder prediction 436 452 - -
Pumo10g01001 452 FunFam Tubulin alpha chain 1 268 - -
Pumo10g01001 452 FunFam Tubulin alpha chain 269 383 - -
Pumo10g01001 452 Coils Coil 418 438 - -
Pumo10g01001 452 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 422 438 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 360 379 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 214 226 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 274 289 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 161 172 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 120 128 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 321 342 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 148 160 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 347 360 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 88 101 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 385 401 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 Gene3D Helix hairpin bin 384 436 IPR023123 -
Pumo10g01001 452 SMART Tubulin_C_4 248 393 IPR018316 -
Pumo10g01001 452 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Pumo10g01001 452 Gene3D - 269 383 IPR037103 -
Pumo10g01001 452 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Pumo10g01001 452 PRINTS Tubulin signature 380 408 IPR000217 GO:0005874|GO:0007017
Pumo10g01001 452 FunFam Tubulin alpha chain 384 449 - -
Pumo10g01001 452 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Pumo10g01001 452 CDD alpha_tubulin 2 435 - -
Pumo10g01001 452 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Pumo10g01001 452 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 244 IPR036525 -
Pumo10g01001 452 SUPERFAMILY Tubulin C-terminal domain-like 246 436 IPR008280 -
Pumo10g01001 452 PANTHER TUBULIN 2 439 IPR000217 GO:0005874|GO:0007017
Pumo10g01001 452 Gene3D Tubulin/FtsZ, GTPase domain 1 268 IPR036525 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01001 Pumo-Chr10 12943527 12945433 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01001 K07374 - gmx:100779027 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01001 10 12943527 12945433 Pumo10g01001 10 12943527 12945433 ECH