Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00976 ATGGCAGCCGTTGATCTTGTTTTTGTTCATAGACCACGAAGATCCAAAGATGCACCCGCCTTAAACCACGAGCGTGTCTCTGTGACAGATAAAGCTAACAACAGGTCTACTCACAATTTGGAATCAGCAGGTTCGCGTGCTTCAACCCTCCGTTCTCGCATCCGGTGTTGTACTACTCTCACTGCTACTTCTACAGAGACTCCCACTCCAACCTCCGTAAAGAAACGAGTAGTGTCGGGAGTTCAGCCCACGGGCTCAATTCACCTCGGAAACTATTTTGGCGCCATCAAAAATTGGGTTGCCCTTCAGAATGTATATGATACACTTTTCTTCATTGTGGACCTGCACGCGATCACATTACCATATGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTATTTGTACAGTCTCATGTTCGGGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATACCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTGACTTGGCTGAACGGGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGGTTAGTAATTGTTTCCAAAATGGACATAAAAACTATCCATAAGATGGGGTTGGAATTATTAGCTTCTTTTATAGAATTTGCATTGGGCTTGACCATTTTTACTTTTATTTTGTACATTTATGACAGCCGAGGTGGTACTATATTTAAGGTTCCAGAGCCACTTATACCTCCAGCAGGAGCCCGAATAATGTCCCTAACTGATGGCCTATCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATTCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAGGATTGGAATTTGACAACTATGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAGGAAGTTGTGCAGGAATGCCAAAACTTGAACTGGGGCACATTCAAACCTCTTTTAACAGATGCGTTGATTGATCATTTGCATCCCATTCAGGTTCGCCATGAGGAAATCATGTCCGATTCAGGTTATTTAGATGGAGTTTTGGCACAAGGTGCTAGAAATGCAGCAGATATAGCAGATTGTACACTTCATAATGTTTACCAAGCAATGGGATTTTTGAAGAGACAGTGA 1377 0.4183 MAAVDLVFVHRPRRSKDAPALNHERVSVTDKANNRSTHNLESAGSRASTLRSRIRCCTTLTATSTETPTPTSVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGLVIVSKMDIKTIHKMGLELLASFIEFALGLTIFTFILYIYDSRGGTIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDSKDLIANKIKRCKTDSFPGLEFDNYERPECNNLLSIYQLISGKTKEEVVQECQNLNWGTFKPLLTDALIDHLHPIQVRHEEIMSDSGYLDGVLAQGARNAADIADCTLHNVYQAMGFLKRQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00976 458 PRINTS Tryptophanyl-tRNA synthetase signature 87 103 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Pumo10g00976 458 PRINTS Tryptophanyl-tRNA synthetase signature 137 156 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Pumo10g00976 458 PRINTS Tryptophanyl-tRNA synthetase signature 214 235 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Pumo10g00976 458 PRINTS Tryptophanyl-tRNA synthetase signature 321 331 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Pumo10g00976 458 MobiDBLite consensus disorder prediction 18 47 - -
Pumo10g00976 458 MobiDBLite consensus disorder prediction 32 47 - -
Pumo10g00976 458 SUPERFAMILY Nucleotidylyl transferase 75 454 - -
Pumo10g00976 458 NCBIfam tryptophan--tRNA ligase 74 242 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Pumo10g00976 458 Gene3D - 312 422 - -
Pumo10g00976 458 FunFam Tryptophan--tRNA ligase 312 422 - -
Pumo10g00976 458 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 47 455 - -
Pumo10g00976 458 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 83 92 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pumo10g00976 458 Gene3D HUPs 69 268 IPR014729 -
Pumo10g00976 458 Pfam tRNA synthetases class I (W and Y) 75 409 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pumo10g00976 458 Hamap Tryptophan--tRNA ligase [trpS]. 74 455 IPR024109 GO:0004830
Pumo10g00976 458 CDD TrpRS_core 76 406 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00976 K01867 - gmx:100780314 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00976 10 12642068 12647349 Pumo10g00976 10 12642068 12647349 ECH