Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00955 ATGGATGGTCAACTTGGTATAAATGAAGAGGAATCACATGACATTGAATATGCTGTTGGAGACAATTCTCTAGTGCCCCGCTTACTGAACAAGTTTCTTGAATTGCATCCCCCGGATTCTTCATCGGGTGTGTCTGAAGTAGAAGGCCAAACATCACTTAAGATATTTGCTGTCAAAGCTGGAGGAATGATGTCTCTAGCTATTGATAACCGTGGGACCCTGTGGATGTGGGGAAACTGCCCACAACAAAGCAAAGAAGGCGGGTTAGCAATTGTAAGCAGTTTCACTCCAACTCCGGTTTGGGATTTTCAGGGTCACACTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCGCTGGTTAGTGCTGGAGAATCATATAATGGTGAAGATCTAGTGTGCTACTCTTGGGGTTATAACAACCATGGCCAATTAGGCTTGGGAGATAGAGAGAGCAGGCTGCATCCGGAAGTTGTTAAAACATTTGATGAGGAGTCCCCTTATGAGGTAGCATGTGGTGCCTTTCACACTGCTTTGCTCACTCACAAAAAGAAACCTAGTGACACATTAGAAAGCACGTGCTGGACCTTTGGTCTTGGGGATAATGGCCAGCTTGGTCATGGAACAACACAAAGCACATTATTTCCTACACCTGTTAAAGAATTGCCACAAAATGTATCACTTATTTGTGTTGACTGTGGTTTGTTTCATACAAGTGTTGTTTCCTCAGATGGGGATGTTTGGTCATGGGGAATGGAGAAGGGCCTTGGCTTATGCCCTGATGCTAGTCGTGCTGGAATAGATTCTGGTGATGCCCTCTCTCCCCGTCTCATGTCATGCAAGCCACGTCAACCTAAATTTCCAGATCCAGTTAAAGTTGCATGTGGGGCTGCACATACTGTTATTGTTGCACGAGAGGGATATAGAATGTGGTCTTGGGGTAGGGGAAGGAATGGAGTTCTTGGAGATGGTAAAGGATTAGATTGGTACACTCCCACGGTTGTGCTATGGCCTACTACAATGGAGGATTTCGAGGAAGATGAAGTAAAAAGCTCTGGTGAGCAAGATAAGGCTAGAGAAGAGGAGACTGAAGTGACAACCGAAACAGAAGAGAAATTATCCTCAGCATTGAATGAGCTGAAGCTGCTCCAAACAAAACTATCTATAATGGAAAAATATGCTAGTATACTTCATGGTTCTATTTTTGGAAAACCTTTTGATGAGCAAGATATCCCTGTTTCATTGCGGAATTCAGGTTCATTTGACATTGCAAAAGAATGGGAGAATATGTTAGAGGCAGCAGATCAAAGGAAGCTAATTAGGTTGGAAATGTTTTACCGTGACATGCTTACTGGAGTGAAAGATGAACTAATGAAGAGAAGGATCAAGGAAATTGTAAAAGAGTGTCTCCAATCCTCAGAGGTGAAAAAATAG 1437 0.4322 MDGQLGINEEESHDIEYAVGDNSLVPRLLNKFLELHPPDSSSGVSEVEGQTSLKIFAVKAGGMMSLAIDNRGTLWMWGNCPQQSKEGGLAIVSSFTPTPVWDFQGHTVVKVACGNEHVVALVSAGESYNGEDLVCYSWGYNNHGQLGLGDRESRLHPEVVKTFDEESPYEVACGAFHTALLTHKKKPSDTLESTCWTFGLGDNGQLGHGTTQSTLFPTPVKELPQNVSLICVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPDASRAGIDSGDALSPRLMSCKPRQPKFPDPVKVACGAAHTVIVAREGYRMWSWGRGRNGVLGDGKGLDWYTPTVVLWPTTMEDFEEDEVKSSGEQDKAREEETEVTTETEEKLSSALNELKLLQTKLSIMEKYASILHGSIFGKPFDEQDIPVSLRNSGSFDIAKEWENMLEAADQRKLIRLEMFYRDMLTGVKDELMKRRIKEIVKECLQSSEVKK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00955 478 MobiDBLite consensus disorder prediction 345 370 - -
Pumo10g00955 478 Coils Coil 367 387 - -
Pumo10g00955 478 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 47 377 - -
Pumo10g00955 478 Pfam Regulator of chromosome condensation (RCC1) repeat 136 181 IPR000408 -
Pumo10g00955 478 Pfam Regulator of chromosome condensation (RCC1) repeat 245 303 IPR000408 -
Pumo10g00955 478 Pfam Regulator of chromosome condensation (RCC1) repeat 195 241 IPR000408 -
Pumo10g00955 478 Gene3D - 2 373 IPR009091 -
Pumo10g00955 478 PRINTS Chromosome condensation regulator RCC1 signature 195 211 IPR000408 -
Pumo10g00955 478 PRINTS Chromosome condensation regulator RCC1 signature 134 150 IPR000408 -
Pumo10g00955 478 PRINTS Chromosome condensation regulator RCC1 signature 294 310 IPR000408 -
Pumo10g00955 478 MobiDBLite consensus disorder prediction 345 371 - -
Pumo10g00955 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 72 124 IPR000408 -
Pumo10g00955 478 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 171 181 IPR000408 -
Pumo10g00955 478 SUPERFAMILY RCC1/BLIP-II 43 339 IPR009091 -
Pumo10g00955 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 133 184 IPR000408 -
Pumo10g00955 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 193 245 IPR000408 -
Pumo10g00955 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 246 307 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00955 Pumo-Chr10 12437944 12440615 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00955 - - gmx:100815199 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00955 10 12437944 12440615 Pumo10g00955 10 12437944 12440615 ECH