Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00941 ATGGATTTCTATGGCAAGAGAACCCTCCTCAGCCTAATGGACACCGAAAAGCCAGAACCGCCACATTCCCCGGTTCACCTTCGTGTCCAAACCCACAGAGAGATAAGCGAACAAGACGTTCAGTTTAGTCCTCCAAGGCCTTCAAGCTCCGATGGCATGTTCCCTATGATGCCAGATTCACCATGGACACTCTCCCCTCTCCCAACCCCTTCACCTTCTTTGCTTTACCACTGCATCGCTTCGCTTCACCGCCACGAAGGTAACATCTACGCCATCGCGGCTTCGAAGGGCTTGGTCTTCACCGGCTCCAACAGCAGTAGAATCCGAGTGTGGAAGCAGCCAGATTGCATGGACAGAGGGTACCTCAAAGCCAGCTCTGGTGAGGTGAGAGCCATTTTGGCTTACAGCAACATGCTTTTCTCCACGCACAAGGATCACAAGATAAGAATATGGACCTTCACCGTTTCGGATAGCTTCAAGTCCAAGAAAGTAGGTACTCTCCCTAGAAAAACCTCGATCCTAATGTTTCCCTCAAGAGGGAAAAACACACCAAAGCACAAAGATTCTGTTTCTTGCATGGCTTATTACCACTCCGAGGGCCTCTTGTACACTGGCTCCCACGACAGAACAGTGAAGGCGTGGCGTGTCTCCGATAGAAAATGCGTTGACTCATTTATAGCACACGAGGATAATGTCAACGCCATATTGGTGAACCAAGACGATGGTTGTCTTTTCACCAGTTCCTCTGATGGATCAGTGAAAATATGGAGAAGGGTTTACACTGAAGACTCTCACACTCTCACCATGACTCTCAAATTCCAACCTTCCCCAGTCAATGCTCTTGCATTGAGTTGCTCGTTCAACCACTGTTTCCTCTACTCAGGTTCTTCTGATGGGATGATAAATTTCTGGGAGAAGGAGAGGTTGTGTTATAGGTTCAACCACGGAGGGTTCTTGCAGGGTCACCGTTTTGCGGTTCTTTGTTTAGCAACTGTTGGGAACATGATATTCAGTGGGTCAGAGGACACCACAATAAGGGTTTGGAGGAGAGAGGAAGGGAGTTGCTACCACGAGTGTTTGACGGTTTTGGATGGGCATAGAGGACCAGTGAGATGCTTGGCTGCGTGCCTCGAGATGGAAAAGGTTGTCATGGGGTTCTTGGTGTATAGTGCTAGTTTGGACCAAACATTTAAGGTTTGGAGGATTAAGGTCTTGCCGGATGAAAAGATGTGCATGGACTATAGTACTGATCAGTGTGAACCCACTAGGGTCAAGATTAGGGACTACGACATGAGCCCGGTTTTGTCGCCTTCCTGGGTCGAGAAGAAGCTTCAAGGTAGCTATTTTCAGTAG 1353 0.4848 MDFYGKRTLLSLMDTEKPEPPHSPVHLRVQTHREISEQDVQFSPPRPSSSDGMFPMMPDSPWTLSPLPTPSPSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSSRIRVWKQPDCMDRGYLKASSGEVRAILAYSNMLFSTHKDHKIRIWTFTVSDSFKSKKVGTLPRKTSILMFPSRGKNTPKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFIAHEDNVNAILVNQDDGCLFTSSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSCSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIKVLPDEKMCMDYSTDQCEPTRVKIRDYDMSPVLSPSWVEKKLQGSYFQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00941 450 CDD WD40 78 401 - -
Pumo10g00941 450 SMART WD40_4 312 349 IPR001680 GO:0005515
Pumo10g00941 450 SMART WD40_4 115 152 IPR001680 GO:0005515
Pumo10g00941 450 SMART WD40_4 218 257 IPR001680 GO:0005515
Pumo10g00941 450 SMART WD40_4 177 215 IPR001680 GO:0005515
Pumo10g00941 450 SMART WD40_4 75 112 IPR001680 GO:0005515
Pumo10g00941 450 SMART WD40_4 264 305 IPR001680 GO:0005515
Pumo10g00941 450 SMART WD40_4 356 401 IPR001680 GO:0005515
Pumo10g00941 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 256 IPR001680 GO:0005515
Pumo10g00941 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 358 IPR001680 GO:0005515
Pumo10g00941 450 SUPERFAMILY WD40 repeat-like 77 403 IPR036322 GO:0005515
Pumo10g00941 450 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 59 404 IPR045182 -
Pumo10g00941 450 Pfam WD domain, G-beta repeat 358 400 IPR001680 GO:0005515
Pumo10g00941 450 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Pumo10g00941 450 Pfam WD domain, G-beta repeat 318 348 IPR001680 GO:0005515
Pumo10g00941 450 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Pumo10g00941 450 Pfam WD domain, G-beta repeat 186 214 IPR001680 GO:0005515
Pumo10g00941 450 MobiDBLite consensus disorder prediction 35 54 - -
Pumo10g00941 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 217 - -
Pumo10g00941 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Pumo10g00941 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Pumo10g00941 450 Gene3D - 175 429 IPR015943 GO:0005515
Pumo10g00941 450 Gene3D - 66 174 IPR015943 GO:0005515
Pumo10g00941 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00941 Pumo-Chr10 12249541 12251294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00941 186 405 Miscellaneous Gene Families AT5G08390 23.348 3.73e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00941 - - gsj:114414206 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00941 10 12249541 12251294 Pumo10g00941 10 12249541 12251294 ECH