Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00917 ATGCGCCCACCGGTTATTCTCAAAACTACCTCTCTTTTCGATTCTTGTTATTATTCTGATTCTTCACCCAGCGATCGCAGACTCAACACTCTCGCAAGACACTTCGTTAGCGTTCACGATTCAATGGCTTCTAACGACGACATCTCCGCTTCGCCAACCGCTGCTTCTGATTCCGTCTTCAATCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTAACTGTCGCTTATAACAAAGATCCAAGTCCAATTAAGCTCAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGAAAGCCTCTTGTTTTGAATGTTGTGAGGCGAGTTGAACAGCAACTCATAAATGACGTGTCACGCAACAAGGAATATCTTCCGATTGTTGGCCTTGCTGATTTTAATAAATTGAGCGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGAGAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCATTAAGGGTTGGGGGCGAATTTTTGGCTAAACACTATCACCAACGAACTATATACTTGCCAACACCAACTTGGGGCAATCACCATAAGGTTTTCAACTTAGCAGGGTTGTCTGTCAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGACTTTGAAGGACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTTGATCCAACCCTTGAGCAATGGAAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGCGGAAGTCTAGATGCAGATGCCCAGCCTGTTCGTTTGTTTGTTGCTGATGGGGGTGAATTGCTGGTAGCACAAAGCTATGCAAAGAATCTGGGTCTTTATGGAGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTCGAGAGCCAGCTGAAACTAGTGATTAGGCCCATGTACTCAAATCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATTATCAATATGCGCCAAGAACTTTTCAATGCTTTACAATCCAGAGGCACACCTGGTGATTGGAGTCACATAATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAGCAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACATCTGGCGGATGCGATACATGCAGCTGTAACTGGAGTTGTCTAA 1383 0.4526 MRPPVILKTTSLFDSCYYSDSSPSDRRLNTLARHFVSVHDSMASNDDISASPTAASDSVFNHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPLVLNVVRRVEQQLINDVSRNKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQCLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHHKVFNLAGLSVKTYRYYAPATRGLDFEGLLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWKQIRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSNPPIHGASIVAAILKDRDLFNDWTIELKAMADRIINMRQELFNALQSRGTPGDWSHIIKQIGMFTFTGLNAEQVSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTGVV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00917 460 SUPERFAMILY PLP-dependent transferases 58 456 IPR015424 -
Pumo10g00917 460 Gene3D Aspartate Aminotransferase, domain 1 65 452 IPR015422 GO:0003824
Pumo10g00917 460 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 303 316 IPR004838 GO:0003824|GO:0009058|GO:0030170
Pumo10g00917 460 PRINTS Aspartate aminotransferase signature 265 277 IPR000796 GO:0006520|GO:0008483
Pumo10g00917 460 PRINTS Aspartate aminotransferase signature 234 253 IPR000796 GO:0006520|GO:0008483
Pumo10g00917 460 PRINTS Aspartate aminotransferase signature 333 358 IPR000796 GO:0006520|GO:0008483
Pumo10g00917 460 PRINTS Aspartate aminotransferase signature 401 419 IPR000796 GO:0006520|GO:0008483
Pumo10g00917 460 Coils Coil 456 460 - -
Pumo10g00917 460 CDD AAT_like 87 440 - -
Pumo10g00917 460 FunFam Aspartate aminotransferase 349 452 - -
Pumo10g00917 460 PANTHER ASPARTATE AMINOTRANSFERASE 54 457 IPR000796 GO:0006520|GO:0008483
Pumo10g00917 460 Gene3D - 119 360 IPR015421 GO:0003824
Pumo10g00917 460 Pfam Aminotransferase class I and II 85 452 IPR004839 GO:0009058|GO:0030170
Pumo10g00917 460 FunFam Aspartate aminotransferase 119 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00917 Pumo-Chr10 11951965 11956695 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00917 K14454 - gmx:547509 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00917 10 11951965 11956695 Pumo10g00917 10 11951965 11956695 ECH