LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g00910	ATGACTATAGGTATTGATGTCTCGTCTCTCTTTGGCGAGATGGTAATGTGCTCTGCAACATCAGACATTGTTCTGAAAAAAATGTGCTACCTATATGTTGGGAACTATGCAAAGGTCAATCCTGATCTTGCACTTTTGACAATTAATTTTCTGCAAAGAGATTGCAAGGATGAGGATCCAATGATTCGGGGACTAGCATTGAGGAGTTTGTGTTCGCTCCGGGTGGCAAACTTGGTGGAGTATTTGGTTGGGCCGTTAGGATCTGGGTTGAAGGACAATAATAGTTATGTCAGGATGGTGGCAGTTATTGGGGTTTTGAAACTATATCATATATCAGCTTCCACCTGTATTGATGCAGATTTTCCAGCAACACTGAAGCATTTGTTGCTTAATGACCCTGATACTCAGGTAGTTGCAAATTGTTTGTGTGCTTTACAAGAAATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCGGCCAGGGAGAGAGAAACTCTACTTAGCAAGCCAGTTGTATATTACCTTTTGAATCGCATTAAGGAATTTAGTGAATGGGCACAATGTCTTGTGCTGGAATTGGTGGCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGACTCCAGCATGCAAATGGTGCTGTTGTCTTGGCAACTATTAAACTATTTCTACAGTTGACTTTGTCTATGGCTGATGTGCATCAGCAGGTATATGAGCGCATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCAGGAAGTCCAGAACAATCTTATGCAGTTTTAAGTCACCTGCATCTTTTGGTCATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGTAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGTTGGGGGAATATTCTCAGGACATGCATGATGCTCCATATGTCTTGGAGAGTTTAGTTGAAAACTGGGATGAGGAGCATTCTGCCGAGGTTCGCCTACATCTTCTTACAGCAGTTATGAAGTGTTTCTTTAAGCGACCACCTGAAACTCAAAAAGCGTTAGGAGCTGCATTGGCTGCTGGGCTTGCTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGCAATACAATGTATCAGTGGCTCAGAGTGTGGTTAACCCTCCAAAGCAAGCAGTTTCAGTATTTGCTGATACTCAGAGCAGTGAAATCAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGCCTTCTTATATGTTCACTGATAAGGAACACCGAGGGACATTTGAGTTTGCAGATGAACTTGGAAATCTATCGATTACTGCAGAATCTGGAGATTCTGTTGTTCCAGCTCAGAGAGTGGAAGCAAATGACAAGGATCTGCTTCTAAGTACTTCAGAAAAAGATGAAGGAAGAGATCCTGGTAGCAATGGTTCTGTCTATAATGCTCCTTCATATAATGGTTCAGCTGCCCCTTCTACAACTTCACAACCACTTGCAGATTTGGCATTTCCAAGTACTGGCATATCTGGTCAAGCTCCAGCTTCTAGCTTTGCAATTGATGATCTGCTTGGTTTAGATTTTCCAGTTGGAACTGCAACCACGCCTTCACCTCCTCCATTGAACCTAAACCCAAAAGCTGTACTGGATCCTGGCACATTTCAGCAGAAATGGCGTCAACTGCCAATATCCTTATCAGAGGAATATTCTCTAACTCCTCAAGGAGTCGCATCGTTGACAACTCCCCATGCACTTCTGCGGCACATGCAAACTCATTCAATACACTGCATTGCATCTGGTGGTCAGTCTCCCAACTTCAAGTTCTTTTTCTTTGCTCAGAAAGCAGAAGCAGCATCAATGTATCTTGTAGAGTGTATAATCAACACATCGTCAGCCAAGTCACAGATTAAAATAAAAGCTGATGACCAAAGTTCATCCCAGGCATTCTCTACTTTATTCCAATCAGCCTTGTCCAAATTTGGTTTACCTTGA	2373	0.4134	MTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVIGVLKLYHISASTCIDADFPATLKHLLLNDPDTQVVANCLCALQEIWTLESSTSEEAARERETLLSKPVVYYLLNRIKEFSEWAQCLVLELVAKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATIKLFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAVLSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAQSVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFADELGNLSITAESGDSVVPAQRVEANDKDLLLSTSEKDEGRDPGSNGSVYNAPSYNGSAAPSTTSQPLADLAFPSTGISGQAPASSFAIDDLLGLDFPVGTATTPSPPPLNLNPKAVLDPGTFQQKWRQLPISLSEEYSLTPQGVASLTTPHALLRHMQTHSIHCIASGGQSPNFKFFFFAQKAEAASMYLVECIINTSSAKSQIKIKADDQSSSQAFSTLFQSALSKFGLP	790

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g00910	790	SUPERFAMILY	ARM repeat	1	544	IPR016024	-
	Pumo10g00910	790	SMART	B2_adapt_app_C_2	668	785	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Pumo10g00910	790	MobiDBLite	consensus disorder prediction	583	626	-	-
	Pumo10g00910	790	FunFam	Beta-adaptin-like protein	659	788	-	-
	Pumo10g00910	790	MobiDBLite	consensus disorder prediction	587	601	-	-
	Pumo10g00910	790	Gene3D	-	1	555	IPR011989	-
	Pumo10g00910	790	Gene3D	-	659	788	IPR012295	-
	Pumo10g00910	790	FunFam	Beta-adaptin-like protein A	1	554	-	-
	Pumo10g00910	790	PANTHER	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	1	755	IPR026739	GO:0016192
	Pumo10g00910	790	Pfam	Beta2-adaptin appendage, C-terminal sub-domain	671	784	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Pumo10g00910	790	PIRSF	Beta_adaptin	1	790	IPR016342	GO:0015031\|GO:0030276
	Pumo10g00910	790	MobiDBLite	consensus disorder prediction	605	626	-	-
	Pumo10g00910	790	Pfam	Adaptin N terminal region	2	497	IPR002553	GO:0006886\|GO:0016192\|GO:0030117

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g00910	Pumo-Chr10	11871069	11878848	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g00910	-		-	gmx:100801153	1493.79

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g00910	10	11871069	11878848	Pumo10g00910	10	11871069	11878848	ECH