Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00895 ATGGGGATAACAGAAGCATGCTCCAGATTCCTGGGGGACTTTTTGCAAGCATTCAAATGTTCCTCACCAAGCTCAGTGTCTCACCTTGATCACAACCATCATCACCCTACATGCAAGCCCCAGAGTATGCTCAAACTTGATGACAAGATGGTTGGTGCCCTTGTCACTGTTTTTGGCATGGAAACCAATGGAAGAATCAAGAAGGAAAATGCTAGGCAAGTGGTGGAGAAGCTTGGTTTGATGTATGAGAAGCCCTCATCAGGGTTTGAGCTAGCTGATGGTGGCTTGCTGGATGATGAGGTGCCTGTGGAAGAGGTGCTTGGTGGGATGGAGGACATGTCAAAGCGCAGTGAGCTGTTGCATGAAGCCTTCAAAATCTTTGATGAGGATGGGGATGGATACATAGATGCAATGGAGTTGAAGAGGGTGCTTGATTGCTTGGGTTTGGACAAGGGTTGGGATATGAGTGCTATAGAGAAGATGGTGAATGTTGCTGATTTGAACTTTGATGGCAAGGTTGATTTTGGTGAGTTTGAATTGCTGATGGGGTAG 552 0.4656 MGITEACSRFLGDFLQAFKCSSPSSVSHLDHNHHHPTCKPQSMLKLDDKMVGALVTVFGMETNGRIKKENARQVVEKLGLMYEKPSSGFELADGGLLDDEVPVEEVLGGMEDMSKRSELLHEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMSAIEKMVNVADLNFDGKVDFGEFELLMG 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00895 183 CDD EFh 120 178 IPR002048 GO:0005509
Pumo10g00895 183 ProSiteProfiles EF-hand calcium-binding domain profile. 153 183 IPR002048 GO:0005509
Pumo10g00895 183 Pfam EF-hand domain pair 119 182 IPR002048 GO:0005509
Pumo10g00895 183 FunFam Calmodulin A 91 183 - -
Pumo10g00895 183 Gene3D - 53 183 - -
Pumo10g00895 183 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Pumo10g00895 183 PANTHER CALCIUM BINDING PROTEIN 58 180 - -
Pumo10g00895 183 SMART efh_1 119 147 IPR002048 GO:0005509
Pumo10g00895 183 SUPERFAMILY EF-hand 57 182 IPR011992 -
Pumo10g00895 183 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00895 Pumo-Chr10 11679391 11680059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00895 120 182 EF-hand Containing Proteins AT4G20780 55.556 3.89e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00895 - - gmx:100527700 311.612