Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00886 ATGGATCAGAAAGTCGATCTCAGCGCTCCCCATTCCATGGGAACCACTATCATCGGCGTTACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACAGGAGTGTATGTTGCCAACAGGGCATCGGACAAAATCACTCAGCTCACTGATAATGTTTATGTGTGTCGCTCTGGATCGGCTGCAGATTCTCAAATTGTCTCTGACTATGTGCGATACTTCCTTCACCAACACACGATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCGGCTTCTCTCATATAACAATAAGAATTTCTTAGAGACCGGGTTAATTGTTGGTGGTTGGGATAAATATGAAGGTGGACAAATTTATGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGGATCTGGCTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCTGAGGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGCGCAAGTGGTGGGGTGGTCCGAACAGTCATAATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCAATATGGCATGAGGAAATGGAGCCCCATAACTCTTTGCTAGACATTCTTGGTGCCCCAGAGCCGATGAGCATGTGA 702 0.4701 MDQKVDLSAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIVGGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPIWHEEMEPHNSLLDILGAPEPMSM 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00886 233 Pfam Proteasome subunit 13 193 IPR001353 GO:0005839|GO:0051603
Pumo10g00886 233 PRINTS Proteasome component signature 143 154 IPR000243 GO:0004298|GO:0005839|GO:0051603
Pumo10g00886 233 PRINTS Proteasome component signature 179 190 IPR000243 GO:0004298|GO:0005839|GO:0051603
Pumo10g00886 233 PRINTS Proteasome component signature 154 165 IPR000243 GO:0004298|GO:0005839|GO:0051603
Pumo10g00886 233 PRINTS Proteasome component signature 22 37 IPR000243 GO:0004298|GO:0005839|GO:0051603
Pumo10g00886 233 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 15 214 IPR029055 -
Pumo10g00886 233 ProSiteProfiles Proteasome beta-type subunit profile. 14 193 IPR023333 -
Pumo10g00886 233 PANTHER METALLOPROTEASE TLDD 6 208 IPR023333 -
Pumo10g00886 233 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 7 200 IPR029055 -
Pumo10g00886 233 CDD proteasome_beta_type_6 15 202 - -
Pumo10g00886 233 FunFam Proteasome subunit beta 15 214 - -
Pumo10g00886 233 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839|GO:0051603
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00886 Pumo-Chr10 11615300 11619783 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00886 K02738 - gmx:100793551 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00886 10 11615300 11619783 Pumo10g00886 10 11615300 11619783 ECH