Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00862 ATGCAAGGGAAAGAAATGGAAGGGTTGTCGTCGTCATCGGCGATCGCGCAGAAAACATGGGAACTGGAGAACAACATCATCCCGATGGACACTCCGGGCGGCGGCGCCAGCAGCACCACGACCACCACCACGACCACCACCACCAACGCCGACGACTCGATCTTCCACTACGACGAGGCAGGCCAGAACGAGTTCCAGCGCGACAAGCCCTGGGCCAACGACCCCCACTATTTCAAGCGCGTGAAGATCTCCGCACTCGCGCTCCTGAAGATGGTGGTCCACGCGCGCTCCGGCGGCACCATCGAGGTCATGGGCCTCATGCAGGGCAAGACCGACGCCGACGCCATCATCGTCATGGACGCCTTCGCCCTCCCCGTCGAAGGCACCGAAACCCGCGTCAATGCCCAGGCCGATGCCTACGAGTACATGGTCGATTATTCCCAGACAAACAAACAGGCTGGGCGGTTGGAGAATGTTGTGGGATGGTATCACTCTCACCCTGGTTACGGGTGCTGGCTGTCGGGGATTGATGTTTCGACGCAGATGCTGAATCAGCAGTTTCAGGAACCGTTTCTGGCGGTTGTGATTGACCCGACGAGGACTGTTTCGGCGGGGAAGGTTGAGATTGGGGCTTTCAGGACTTACCCTGAAGGCTATAAGCCTCCGGATGAGCCTATTTCTGAGTATCAGACTATTCCTCTCAATAAGATTGAGGATTTTGGTGTTCACTGTAAACAGTATTATGCCTTGGATATCACTTACTTTAAGTCCTCTCTTGATTCACACCTCTTGGACCTGCTGTGGAACAAGTATTGGGTGAATACGCTGTCGTCTTCTCCTCTGTTGGGTAATGGAGATTATGTTGCTGGGCAAATCTCTGATTTAGCTGAGAAGCTAGAACAAGCAGAGAATCAGTTGGCACACTCACGCTTTGGACCACTAATAGCACCTGCACCTAGAAAGAAAGAGGAGGAATCTCCACTAGCTAAGATTACTCGTGACAGTGCAAAAATAACTGTGGAGCAAGTGCATGGTCTAATGTCACAGGTCATCAAAGACATTCTGTTTAACTCTGTTCATCAAGCAAACAGAACTCGCACAGAAGCATCTGGTCCTGAACCAATGATTGAAAGCTGA 1137 0.5233 MQGKEMEGLSSSSAIAQKTWELENNIIPMDTPGGGASSTTTTTTTTTTNADDSIFHYDEAGQNEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPAPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANRTRTEASGPEPMIES 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00862 378 Gene3D Cytidine Deaminase, domain 2 9 283 - -
Pumo10g00862 378 SUPERFAMILY JAB1/MPN domain 80 217 - -
Pumo10g00862 378 Pfam Cop9 signalosome subunit 5 C-terminal domain 277 357 IPR040961 -
Pumo10g00862 378 ProSiteProfiles MPN domain profile. 81 218 IPR037518 -
Pumo10g00862 378 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 66 365 - -
Pumo10g00862 378 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 78 189 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pumo10g00862 378 FunFam COP9 signalosome complex subunit 5 10 283 - -
Pumo10g00862 378 MobiDBLite consensus disorder prediction 31 49 - -
Pumo10g00862 378 MobiDBLite consensus disorder prediction 28 49 - -
Pumo10g00862 378 SMART pad1_6 80 217 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pumo10g00862 378 CDD MPN_RPN11_CSN5 70 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00862 Pumo-Chr10 11370211 11374682 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00862 K09613 - gmx:100817371 736.873