Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00838 ATGATGGCTATAAATAGAGATGTAGCGGTTCCCGTCGGTAGTAAAGAAAGGAAAAGGAAAATGAAGATGAGAATGAGGGTAGTGTTATGCGTATTATTAGTGTTGTTTGTGGTAGGAAGCTGGGGAGAGCAGTGTGGAAGACAAGCAGGGGGTGCTCTGTGCCCGGGGGGTCTGTGTTGCAGCCAATTTGGGTGGTGTGGCACAACCAAGGACTACTGCGGCCCGGGATGCCAAAGTCAATGTGGTGGGCCTGGGCCTGGGTCTGATCTAAGCAGCATCATCTCGAGGAGCAGCTTCGACGAGATGCTGAAACATCGCAACGACGGAGCGTGCCCAGGCAAAGGGTTTTACACCTACGATGCTTTCATCGCAGCTGCCAAGGCTTTCCCGAGCTTCGGCAACATCGGAGACACGGCCACTCGCAAAAAGGAAATTGCCGCTTTCTTGGGCCAAACTTCTCACGAGACCACAGGAGGGTGGCCTAGTGCTCCTGATGGACCATACGCTTGGGGATACTGCTTCGTGAGGGAACAAAACCCAAGTGCGTACTGTTCCCCAAGTGCGGAATTCCCTTGTGCTCCGGGGAAGCAATACTATGGTCGGGGACCCATCCAAATCTCATGGAACTACAACTACGGACAGTGTGGAAGAGCAATAGGGGTGGACTTGCTGAACAACCCTGACCTGGTGGCCACTGACCCAGTCATCTCCTTCAAGTCTGCCTTCTGGTTCTGGATGACGCCACAGTCACCCAAGCCATCCTGCCACGACGTCATCACTGGACGATGGAGCCCATCCGGTGCTGATCAGGCTGCGGGGCGACTTCCCGGGTACGGCACAGTGACCAACATCATCAACGGCGGCCTTGAATGCGGCAGAGGACAGGATAGCAGGGTGGAGGACCGCATCGGTTTTTACAAGAGATACTGTGACTTGCTTGGTGTTGCTTATGGCAATAATCTCGACTGTTTCTCTCAGAGGCCATTTGGCAATTCCCTACTACTCCACGCCATCATCTAA 1020 0.5382 MMAINRDVAVPVGSKERKRKMKMRMRVVLCVLLVLFVVGSWGEQCGRQAGGALCPGGLCCSQFGWCGTTKDYCGPGCQSQCGGPGPGSDLSSIISRSSFDEMLKHRNDGACPGKGFYTYDAFIAAAKAFPSFGNIGDTATRKKEIAAFLGQTSHETTGGWPSAPDGPYAWGYCFVREQNPSAYCSPSAEFPCAPGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKSAFWFWMTPQSPKPSCHDVITGRWSPSGADQAAGRLPGYGTVTNIINGGLECGRGQDSRVEDRIGFYKRYCDLLGVAYGNNLDCFSQRPFGNSLLLHAII 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00838 339 SMART ChitinBD_3 44 81 IPR001002 GO:0008061
Pumo10g00838 339 FunFam Endochitinase (Chitinase) 175 232 - -
Pumo10g00838 339 Gene3D - 93 323 - -
Pumo10g00838 339 CDD chitinase_GH19 94 323 - -
Pumo10g00838 339 CDD ChtBD1_GH19_hevein 43 82 - -
Pumo10g00838 339 Gene3D Endochitinase, domain 2 176 232 - -
Pumo10g00838 339 ProSiteProfiles Chitin-binding type-1 domain profile. 42 83 IPR001002 GO:0008061
Pumo10g00838 339 Gene3D - 42 83 IPR036861 GO:0008061
Pumo10g00838 339 ProSitePatterns Chitinases family 19 signature 2. 236 246 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo10g00838 339 Pfam Chitinase class I 93 323 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo10g00838 339 ProSitePatterns Chitinases family 19 signature 1. 111 133 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo10g00838 339 SUPERFAMILY Plant lectins/antimicrobial peptides 44 85 IPR036861 GO:0008061
Pumo10g00838 339 SUPERFAMILY Lysozyme-like 89 330 IPR023346 -
Pumo10g00838 339 PIRSF Endochitinase 16 330 IPR016283 GO:0004568|GO:0005975
Pumo10g00838 339 Pfam Chitin recognition protein 44 81 IPR001002 GO:0008061
Pumo10g00838 339 ProSitePatterns Chitin recognition or binding domain signature. 54 73 IPR018371 GO:0008061
Pumo10g00838 339 FunFam Basic endochitinase 42 83 - -
Pumo10g00838 339 PANTHER CHITINASE-RELATED 30 327 - -
Pumo10g00838 339 PRINTS Chitin-binding domain signature 60 67 IPR001002 GO:0008061
Pumo10g00838 339 PRINTS Chitin-binding domain signature 67 74 IPR001002 GO:0008061
Pumo10g00838 339 PRINTS Chitin-binding domain signature 52 60 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00838 Pumo-Chr10 10405704 10406966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00838 15 338 Glycoside Hydrolase AT3G12500 70.091 2.79e-165 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00838 K20547 - rcu:8282410 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00838 10 10405704 10406966 Pumo10g00838 10 10405704 10406966 ECH