Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00837 ATGCTTGCATCGAACATGGAAGGGTTGGCGCTTCCAGTTGCGCAATCACAACTGTTGCCGTTTCCAAAGCCAAAGGTGTTCGCTATTCCCACAGGCACAGCTTATAGCAATGGATTTGTCTCTCTCAAACGACACCGTGGACGCGGGTTTCGTTTTCGCACTTGGTTATGTTCGCAGGCACAGGCACAGGCACAAGGCGTTCCTCTTCCCGAACAAGTCACAGTCACAGTCACAGAGAAGGATCATTGTGTTTGTGTGAGTGGGGATTCCATACGGCAGAGATTTCTGAATTTCTATGCTTCCCGTGGTCACAAGGTTCTTCCCAGCGCTTCTCTGGTCCCAGATGATCCCACTGTTCTACTCACCATCGCAGGGATGCTTCAATTCAAGCCTATCTTCCTAGGCAAGGTTCCAAGACAAGTACCTTGTGCTGCTACTGCACAAAGGTGCATCCGTACTAATGATATCCACAATGTTGGCCTAACTGCCAGACATCAGACATTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCTATGGGCATGGGAGCTTTCCACCGCAGAGTTTGGTTTGCCACCAGACAGATTGTGGATTAGTGTTTATGAAGATGATGACGAGGCTTTTCAGCTCTGGTCTGATGAGGTCGGTGTCCCAGTTGAGCGAATAAAGAGGTTGGGAGAAGAGGACAACTTCTGGACCAGTGGAGTGACAGGTCCCTGTGGTCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGATATGTAGATGCCGATCTCAGTGATGATACAAGGTTTATAGAGTTCTACAACTTAGTATTCATGCAATACAACAAAAAAGATGACGGTTCTCTTGAACCTCTAAAGCAGAAGAACATAGATACTGGCCTTGGACTGGAGCGTATGGCTCGTATTCTTCAAAAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGAAAGCCTCTAAATTAGCAAATGTTTCATATGGTATTGCCGATGATCAGACAAAGAGGAATTTGAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGAGTTGTCCCATCAAATGTTGGGAGAGGTTATGTAGTTCGGCGGCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGATGGTAGGGGTGACCTTGAAGGAGCATTTTTACCAATTATTGCTGAGAAGGTAGTGGAATTAAGTACACACATTGATGTTGATGTGAAGAACAAAGCACCTCGTATTTTGGAGGAGTTGAAGAGAGAAGAACTTCGGTTTGTGCAGACACTTGAGAGAGGAGAAAAGTTGCTTGAGGAGAAACTTTCTGATGCTTTATCAAGTGCAGAAAGAAATGGAACTGTGCCTTGCTTGGCTGGTGAAGATGTGTTTCTTTTGTATGATACTTATGGATACCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTATTGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCACACAATACTGTCAAACTTGCCATTGAAAATGGAGAAAATATTGCAGAGAATGTACCTGACACTGAATTTATTGGATATGACAGCCTTCATTGTAAAGCAATGATAGAAAGCCTAATGATAAATGGAAGTCCAGCTGCACAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAGCAAGACTCCATTTTATGCTGAATCAGGAGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGAAAATCAACCAAAAGCTGTTGTGGAGATATTAGATGTTCAGAAATCTTTTGGCAACATATTTGTTCACAAGGGTACAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAAGAAGTGGACGCAGCAGTTGATGTGAAGCTGAGGCAGCGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCACTTAAAAAAGTTATTGGTCAGGAGACCTCACAAGCTGGTTCATTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGACCACTTCGTGACAGTGAGCTTGCTGAAATTGAAGTGCTAATCAATGGATGGATTGAGGATGCAACGCTACTTCAAACCAAAGTGATGCCTCTTGCTGATGCAAAAAGTGCTGGGGCTATAGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTTGTAGAGGTTCCTGGTGTATCGATGGAACTTTGTGGTGGGACTCATGTCAGTAATACTTCTGAAATTCGTGGTTTTAAAATTATCTCAGAACAGGGTATTGCATCTGGAATCAGACGTATTGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATATCAATGCCCGAGACTTTTATCTGAAGCAGCTATGTTCCACTCTCAAAGTTAAACCAGAAGAAGTGACAACAAGGATAGAAAACCTTTTAGAGGAGTTACGGGTAGTGAGAAATGAAAATTCTGCTGTGCGTGCAAAAGCAGCAATCTACAAAGCTTCAGTCATTGCAAGCAAAGCATTGTTGGTGGGGAATTCAAAACAGTACAGGGTACTAGTTGAGTGCTTTGATGATGTTGATGCTGAGTCACTTAAAAGTGCTGCAGAATATTTACTGGAAACACTAACAGATCCAGCAGCTGTGGTACTGGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTAGTTGCTGCTTTTACTCCAGGGGTGGTTGATCAGGGGATTCAGGCAGGTAAGTTTATTGGACAGATAGCAAAATTATGTGGTGGTGGAGGAGGTGGAAGGCCAAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAAAATTTGGCAAGTGCCCTTGATAAGGCTCGGTCAGAGCTTATAGCTACTCTCTGTGAAAAAGGGAATTGA 2958 0.4317 MLASNMEGLALPVAQSQLLPFPKPKVFAIPTGTAYSNGFVSLKRHRGRGFRFRTWLCSQAQAQAQGVPLPEQVTVTVTEKDHCVCVSGDSIRQRFLNFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPCAATAQRCIRTNDIHNVGLTARHQTFFEMLGNFSFGDYFKKQAILWAWELSTAEFGLPPDRLWISVYEDDDEAFQLWSDEVGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYVDADLSDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASKLANVSYGIADDQTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPIIAEKVVELSTHIDVDVKNKAPRILEELKREELRFVQTLERGEKLLEEKLSDALSSAERNGTVPCLAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMDGFDIEMEKQRRQSQAAHNTVKLAIENGENIAENVPDTEFIGYDSLHCKAMIESLMINGSPAAQVSEGSNVEVLLSKTPFYAESGGQIGDHGFLYISEGENQPKAVVEILDVQKSFGNIFVHKGTVQKGVVEVGKEVDAAVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLRDSELAEIEVLINGWIEDATLLQTKVMPLADAKSAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYINARDFYLKQLCSTLKVKPEEVTTRIENLLEELRVVRNENSAVRAKAAIYKASVIASKALLVGNSKQYRVLVECFDDVDAESLKSAAEYLLETLTDPAAVVLGSCPGEGKVSLVAAFTPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLASALDKARSELIATLCEKGN 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00837 985 FunFam Alanine--tRNA ligase 867 976 - -
Pumo10g00837 985 Gene3D - 723 776 - -
Pumo10g00837 985 Gene3D - 799 860 - -
Pumo10g00837 985 FunFam Alanine--tRNA ligase 85 319 - -
Pumo10g00837 985 Hamap Probable alanine--tRNA ligase, chloroplastic. 78 982 IPR027522 GO:0009507
Pumo10g00837 985 SMART tRNA_SAD_4 752 795 IPR012947 GO:0004812|GO:0005524|GO:0043039
Pumo10g00837 985 Gene3D - 868 976 - -
Pumo10g00837 985 CDD AlaRS_core 89 318 - -
Pumo10g00837 985 PRINTS Alanyl-tRNA synthetase signature 154 165 IPR002318 GO:0000166|GO:0005737
Pumo10g00837 985 PRINTS Alanyl-tRNA synthetase signature 303 316 IPR002318 GO:0000166|GO:0005737
Pumo10g00837 985 PRINTS Alanyl-tRNA synthetase signature 354 370 IPR002318 GO:0000166|GO:0005737
Pumo10g00837 985 PRINTS Alanyl-tRNA synthetase signature 378 391 IPR002318 GO:0000166|GO:0005737
Pumo10g00837 985 PRINTS Alanyl-tRNA synthetase signature 276 287 IPR002318 GO:0000166|GO:0005737
Pumo10g00837 985 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 86 808 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Pumo10g00837 985 NCBIfam alanine--tRNA ligase 91 959 IPR002318 GO:0000166|GO:0005737
Pumo10g00837 985 Pfam tRNA synthetases class II (A) 91 653 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Pumo10g00837 985 Gene3D - 662 797 - -
Pumo10g00837 985 Gene3D Bira Bifunctional Protein; Domain 2 86 319 IPR045864 -
Pumo10g00837 985 SUPERFAMILY Class II aaRS and biotin synthetases 88 322 IPR045864 -
Pumo10g00837 985 Gene3D - 571 651 - -
Pumo10g00837 985 PANTHER ALANYL-TRNA SYNTHETASE 82 975 - -
Pumo10g00837 985 SUPERFAMILY ThrRS/AlaRS common domain 651 810 IPR018163 GO:0000166
Pumo10g00837 985 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 323 532 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Pumo10g00837 985 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 752 795 IPR012947 GO:0004812|GO:0005524|GO:0043039
Pumo10g00837 985 Coils Coil 831 851 - -
Pumo10g00837 985 FunFam Alanine--tRNA ligase, cytoplasmic 652 809 - -
Pumo10g00837 985 SUPERFAMILY Translation proteins 546 651 IPR009000 -
Pumo10g00837 985 FunFam Alanine--tRNA ligase 723 776 - -
Pumo10g00837 985 FunFam Probable alanine--tRNA ligase, chloroplastic 537 651 - -
Pumo10g00837 985 Hamap Alanine--tRNA ligase [alaS]. 87 980 IPR023033 GO:0004813
Pumo10g00837 985 Pfam DHHA1 domain 832 974 IPR003156 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00837 Pumo-Chr10 10394906 10401681 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00837 K01872 - gmx:100817906 1772.67