Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00725 ATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAGGGAGAGGAGATCTGACTTCGAGAACTCCGAGGATGAAAGGAGGACCAGAATTGGATCTCTCAAAAAGAAGGCACTTAATGCATCCTCCAAATTCAAACACACCCTTAGAAAGAAGAGTAGCAGGAGGAAAAGCGATGGCCGTGTCAGCTCCGTTTCAATTGAGGACGTTCGCGATTTTGAGGAGCTGCAGGCTGTCGACGCCTTTCGCCAATCCTTGATCATGGACGAATTGCTCCCTGAAGCCTTTGATGATTACCATATGATGTTAAGATTTTTGAAAGCGAGGAAGTTCGATATTGATAAGGCAAAGCATATGTGGACTGACATGCTACAATGGAGGAAGGAGTTTGGTGCCGATACTATTATGCAGGATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGCCATCATGGTGTCGATAAGGAGGGAAGGCCTGTTTATATTGAAAGACTTGGAAAAGTTGATCCAAACAAACTTATGCAAGTTACAACTATGGATAGATATGTGAAGTACCATGTGCAAGAGTTTGAGAAAGCTTTTGCAATCAAGTTTCCTGCTTGCTCTATTGCTGCCAAGAGGCACATTGATTCCAGCACCACAGTCTTAGATGTTCACGGAGTGGGCCCTAAGAACTTTACAAAGTCTGCCCGGGAACTCATTACGCGATTGCAGAAGATTGATGGTGACAATTACCCTGAGACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTTTGGAACACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCCAAGATTCATGTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTAATAGATGCCAGTGAGTTGCCTGAATTTCTGGGAGGTACCTGCACTTGTGCAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGGCCCTGGAAAAACCCTGAAATATTCAAGATGGTTCTCAATGGTGGAGCATGGCGGTCAAAACAAGTTGTAAAAGTTCTTAACAATGAAAGAAAGGTTATTGTGTATGCCAAGCCAGGATACCCAACGGTAAAAGGCAGTGATACATCCACTGCTGAATCAGGGTCAGAAGCCGAAGATATATCCTCTCCAAAAGCGATGAAGAGTTATTCACACCTTAGGCTGACCCCTGTTCATGAGGAAGCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGATGAATATGTTCCAATGGTAGACATACCTGTTGATGCTGGTTGTAAGAAGCAGGCGTCTGTACAGAGGTCTTACACCTCAAAAGGAGCACCTCCTCCTCCTGACACTCAGAAAACTCCAGAAGGGCTTCAAGCTCGTATTTGGGTAGCACTGTCTGTCTTCTTCTTGACTGTATTAACTCTTTTACGTCAAGTTGCATACCCTGTGACCAAGAAATTTCCTGCATTATCTTCTAATGGTGATACGAGTACTTCAGAACCACCTCCTGATACAACAAACAGGGAAGTTCTTCCTCCTTCATCAACTCCACCATGTACAGATGAAAATCTCCTTCCCTCCATGCTGAAAAGGTTAGGTGAGCTTGAAGAGAAGGTTGACACACTCCAATCTAAGCCATCTGAGATGCCTTATGAGAAAGAGGAATTGTTGAATGCTGCTGTATGCCGGGTGGATGCTTTGGAAGCTGAGTTAATTGCTACTAAAAAGGCTTTGTATGATGCCTTAATGAGGCAAGAAGAGCTGCTTGCTTATATTGACAGACAAGAAGAAGCCAAGTTGCGGGATTGCCTACTCACCTTGTCCTCTGGTTTTCTTCGTAGATCTGCTTTCTTCAAAAAGTAG 1917 0.4382 MSGPLDRFARPCFEGFSGSDEKRERRSDFENSEDERRTRIGSLKKKALNASSKFKHTLRKKSSRRKSDGRVSSVSIEDVRDFEELQAVDAFRQSLIMDELLPEAFDDYHMMLRFLKARKFDIDKAKHMWTDMLQWRKEFGADTIMQDFEFKELDEVVKYYPHGHHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVQEFEKAFAIKFPACSIAAKRHIDSSTTVLDVHGVGPKNFTKSARELITRLQKIDGDNYPETLCQMFIINAGPGFRLFWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCTCADQGGCLRSDKGPWKNPEIFKMVLNGGAWRSKQVVKVLNNERKVIVYAKPGYPTVKGSDTSTAESGSEAEDISSPKAMKSYSHLRLTPVHEEAKIVGKTSYASNLSGYDEYVPMVDIPVDAGCKKQASVQRSYTSKGAPPPPDTQKTPEGLQARIWVALSVFFLTVLTLLRQVAYPVTKKFPALSSNGDTSTSEPPPDTTNREVLPPSSTPPCTDENLLPSMLKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALYDALMRQEELLAYIDRQEEAKLRDCLLTLSSGFLRRSAFFKK 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00725 638 Gene3D - 140 350 IPR036865 -
Pumo10g00725 638 MobiDBLite consensus disorder prediction 1 42 - -
Pumo10g00725 638 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 24 613 - -
Pumo10g00725 638 MobiDBLite consensus disorder prediction 507 540 - -
Pumo10g00725 638 FunFam SEC14 cytosolic factor 140 352 - -
Pumo10g00725 638 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Pumo10g00725 638 Gene3D - 51 139 - -
Pumo10g00725 638 Pfam CRAL/TRIO, N-terminal domain 107 131 IPR011074 -
Pumo10g00725 638 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Pumo10g00725 638 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Pumo10g00725 638 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Pumo10g00725 638 CDD SEC14 153 321 IPR001251 -
Pumo10g00725 638 SMART sec14_4 152 323 IPR001251 -
Pumo10g00725 638 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Pumo10g00725 638 Pfam CRAL/TRIO domain 159 320 IPR001251 -
Pumo10g00725 638 SUPERFAMILY CRAL/TRIO domain 152 346 IPR036865 -
Pumo10g00725 638 MobiDBLite consensus disorder prediction 505 541 - -
Pumo10g00725 638 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Pumo10g00725 638 Coils Coil 543 563 - -
Pumo10g00725 638 MobiDBLite consensus disorder prediction 452 472 - -
Pumo10g00725 638 MobiDBLite consensus disorder prediction 16 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00725 Pumo-Chr10 9250098 9255299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00725 86 317 Acyl Lipid Metabolism Gene Families AT5G47730 29.630 1.60e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00725 K26544 - gmx:100783495 1164.44