LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g00713	ATGGCTTCTGCTTGTGTGACCTTGAAAGCCAATACCCATTTAGCAAACTCAGAGAAAGGCTTTCTAGGGGAAAGAGTAAAAGGTGGCTTCAACAACAGTGCCTTGGTGATGAATCAGTTGGCTAAACGTTCAAGAAGCCAAACGAGGGTGAAACATGGTGTTGTATCTGCTATTCTCACTTCAAACAATGCCAAAGAATCACTGACCTTGCAAGTGCCTTCATTTCTAAGACGAAGGGCTGATCCAAAAAATGTTGTTTCCATCATATTGGGAGGAGGACCGGGGACACAACTCTTTCCTCTCACCAAACGTGCTGCCACACCAGCGGTTCCTGTGGGTGGATGCTACAGGCTTATAGACATCCCTATGAGCAACTGCCTCAACAGTGGCATCAACAAAATATTTGTGCTGACTCAGTTCAACTCTGCATCCCTCAACCGTCACATCGCCCGCACCTATTTTGGAAATGGCATCAACTTTGGGGATGGGATTGTGGAGGTTCTGGCGGCTACTCAAACACCAGGAGAGGCTGGAAAGAATTGGTTCCAAGGAACTGCAGATGCTGTGAGGCAATTCACTTGGGTATTTGAGGATGCCAAGAATACAAATGTTGAGAATGTATTGATCTTGGCTGGAGATCATCTATATCGAATGGATTACATGGACCTTGTGCAGAGTCACGTTGATAGAAATGCTGATATTACAGTTTCATGTGCCGCTGTGGGTGACGGCCGTGCATCAGATTATGGATTGGTTAAAGTAGATGACACAGGCCGCATCATTCAATTTTCAGAAAAACCAAAGGGTGATGATCTGAAAGCAATGCAAGCAGATACCTCTCTTCTTGGGTTGTCACCCCAAGATGCATTAAACTCACCATATATTGCATCTATGGGGGTTTATGTATTCAAGACAGATGTTTTACTCAATCTTCTGAAATGGAGATATCCTACCTCCAATGATTTCGGATCTGAAATCATCCCTGCAGCTGTGAGAGATCACAATGTCCAATCGTATGTTTTTGGAGACTATTGGGAAGACATTGGAACAATAAAATCCTTTTACGATGCTAACTTGGCTCTTACTGAAGAGAGTCACAAGTTCGAATTTTATGACCCCAAGACTCCCATTTACACATCTCCAGGATTCCTACCACCAACAAAGATTGACAAATGCCGGATTGTGGATGCTATTATCTCCCATGGATGTTTCCTGCGAGAATGCACAGTCCAACACTCCATTGTGGGTGAACGTTCACGTTTGGATTATGGTGTTGAGCTCCTGGACACTGTAATGATGGGAGCAGACTATTACCAAACTGAATCCGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTCCCAATTGGTATCGGAAGGAATACAAAAATTAGGAACTGTATTATTGACAAGAATGCAAAGATCGGGAAAGATGTCATAATCGCAAACAAAGATGGCGTTCAAGAAGCAGACAGACCAGAAGATGGATTCTACATTCGATCAGGAATCACCATCATAATGGAGAAGGCAACAATAGAAGATGGCACTGTCATATAA	1554	0.4369	MASACVTLKANTHLANSEKGFLGERVKGGFNNSALVMNQLAKRSRSQTRVKHGVVSAILTSNNAKESLTLQVPSFLRRRADPKNVVSIILGGGPGTQLFPLTKRAATPAVPVGGCYRLIDIPMSNCLNSGINKIFVLTQFNSASLNRHIARTYFGNGINFGDGIVEVLAATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDGRASDYGLVKVDDTGRIIQFSEKPKGDDLKAMQADTSLLGLSPQDALNSPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVRDHNVQSYVFGDYWEDIGTIKSFYDANLALTEESHKFEFYDPKTPIYTSPGFLPPTKIDKCRIVDAIISHGCFLRECTVQHSIVGERSRLDYGVELLDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIANKDGVQEADRPEDGFYIRSGITIIMEKATIEDGTVI	517

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g00713	517	Pfam	Nucleotidyl transferase	87	363	IPR005835	GO:0009058
	Pumo10g00713	517	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	73	382	IPR029044	-
	Pumo10g00713	517	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	181	189	IPR005836	GO:0005978\|GO:0008878
	Pumo10g00713	517	CDD	ADP_Glucose_PP	88	348	-	-
	Pumo10g00713	517	SUPERFAMILY	Trimeric LpxA-like enzymes	380	517	IPR011004	-
	Pumo10g00713	517	FunFam	Glucose-1-phosphate adenylyltransferase	67	382	-	-
	Pumo10g00713	517	FunFam	Glucose-1-phosphate adenylyltransferase	383	517	-	-
	Pumo10g00713	517	CDD	LbH_G1P_AT_C	385	511	-	-
	Pumo10g00713	517	NCBIfam	glucose-1-phosphate adenylyltransferase	85	481	IPR011831	GO:0005978\|GO:0008878
	Pumo10g00713	517	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	39	517	IPR011831	GO:0005978\|GO:0008878
	Pumo10g00713	517	Gene3D	Hexapeptide repeat proteins	383	517	-	-
	Pumo10g00713	517	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	91	110	IPR005836	GO:0005978\|GO:0008878
	Pumo10g00713	517	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	296	306	IPR005836	GO:0005978\|GO:0008878
	Pumo10g00713	517	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	83	478	IPR029044	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g00713	Pumo-Chr10	9110844	9115193	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g00713	K00975		-	gmx:100814910	1004.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g00713	10	9110844	9115193	Pumo10g00713	10	9110844	9115193	ECH