Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00699 ATGACCTGTGCTTTCTCACCAACTGGTCAATCTGTTGCATGTGGGGGCCTTGACAGTGTTTGCTCAATTTTTAATCTTAATTCCCCCACTGACAGGGATGGAAATCTAGATGTTTCGCGGATGCTTAGTGGACATAAAGGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGACACTCACTTAATAACTGGTTCCGGCGATCAGACATGTGTTTTATGGGATATTACTACTGGCCTTAGAACGTCTGTTTTTGGTGGTGAATTTCAGTCTGGACATACTGCTGATGTACTTAGCATTTCCATTAATGGATCCAACTCTAGAATGTTTGTATCTGGTTCTTGTGATGCAACTGCCCGATTGTGGGACACTCGTGTCGCGAGCCGAGCAGTGCGGACATTTCATGGGCACCAGGGGGATGTTAATACTGTCAAATTCTTTCCTGATGGAAATAGATTTGGAACTGGCTCAGCTGATGGAACTTGCAGATTGTTTGACATTAGGACTGGCCACCAACTACAAGTATATCATCAGCAACACAGTGACAATGAAGCTGCACATGTGACCTCCATTGCATTCTCCATATCTGGAAGACTTCTTTTTGCTGGATATACAAATGGTGATTGCTATGTTTGGGACACTTTGTTGGCAAAGGTGGTCTTGAATTTAGGATCTCTTCAAAACACTCATGAGGGCAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCCTTGTGTACAGGAAGTTGGGACACAAACTTAAAGATATGGGCATTTGGAGGGTATAGGAGGGTGATTTGA 804 0.4353 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDRDGNLDVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATARLWDTRVASRAVRTFHGHQGDVNTVKFFPDGNRFGTGSADGTCRLFDIRTGHQLQVYHQQHSDNEAAHVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNTHEGRISCLGLSADGSALCTGSWDTNLKIWAFGGYRRVI 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00699 267 ProSiteProfiles Trp-Asp (WD) repeats profile. 42 84 IPR001680 GO:0005515
Pumo10g00699 267 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 259 IPR016346 GO:0007165
Pumo10g00699 267 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 42 79 - -
Pumo10g00699 267 FunFam Guanine nucleotide-binding protein subunit beta 1 259 - -
Pumo10g00699 267 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 258 IPR001680 GO:0005515
Pumo10g00699 267 SMART WD40_4 82 123 IPR001680 GO:0005515
Pumo10g00699 267 SMART WD40_4 219 259 IPR001680 GO:0005515
Pumo10g00699 267 SMART WD40_4 169 213 IPR001680 GO:0005515
Pumo10g00699 267 SMART WD40_4 127 166 IPR001680 GO:0005515
Pumo10g00699 267 SMART WD40_4 35 75 IPR001680 GO:0005515
Pumo10g00699 267 SUPERFAMILY WD40 repeat-like 2 258 IPR036322 GO:0005515
Pumo10g00699 267 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 267 - -
Pumo10g00699 267 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 90 125 - -
Pumo10g00699 267 PIRSF GNBP_B 1 261 - -
Pumo10g00699 267 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 175 IPR001680 GO:0005515
Pumo10g00699 267 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 170 - -
Pumo10g00699 267 Pfam WD domain, G-beta repeat 179 213 IPR001680 GO:0005515
Pumo10g00699 267 Pfam WD domain, G-beta repeat 229 258 IPR001680 GO:0005515
Pumo10g00699 267 Pfam WD domain, G-beta repeat 131 166 IPR001680 GO:0005515
Pumo10g00699 267 Pfam WD domain, G-beta repeat 91 123 IPR001680 GO:0005515
Pumo10g00699 267 Pfam WD domain, G-beta repeat 40 75 IPR001680 GO:0005515
Pumo10g00699 267 Gene3D - 1 259 IPR015943 GO:0005515
Pumo10g00699 267 ProSiteProfiles Trp-Asp (WD) repeats profile. 90 132 IPR001680 GO:0005515
Pumo10g00699 267 CDD WD40 2 259 - -
Pumo10g00699 267 PRINTS G protein beta WD-40 repeat signature 62 76 IPR020472 -
Pumo10g00699 267 PRINTS G protein beta WD-40 repeat signature 110 124 IPR020472 -
Pumo10g00699 267 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Pumo10g00699 267 ProSitePatterns Trp-Asp (WD) repeats signature. 62 76 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00699 Pumo-Chr10 8970019 8974217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00699 62 266 Miscellaneous Gene Families AT5G08390 28.293 7.23e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00699 K04536 - gmx:100811645 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00699 10 8970019 8974217 Pumo10g00699 10 8970019 8974217 ECH