Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00698 ATGGCTCAGCCGCTCGTGAAGAAGGACGATGACCGCGACGACGAAGCTGAGTATTCCCCCTTTCTGGGAATTGAAAAGGGGTCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAGGTTATTACCAAACTCCTATACCTACTGAATCAGGGAGAGACATTTACAAAGGTTGAAGCCACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTAAAGATATGGGATTAAGGAGAATGGTCTACCTAATGATAAAGGAGATCTCTCCCTCTGCAGATGAGGTTATCATTGTCACAAGCTCTCTCATGAAGGATATGAACAGCAAGATTGATATGTACCGAGCAAATGCCATTCGAGTGCTGTGTCGTATTACTGACGGAACCCTCCTGTCACAAATTGAGCGGTATTTAAAACAAGCCATTGTAGATAAAAATCCAGTTGTTGCAAGTGCTGCTCTAATTAGTGGCATTCATCTACTCCAGACAAATCCTGAAATTGTAAAAAGATGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCCCTTGTACAATTTCATGCACTGGCTTTGCTACATCAGATACGGCAGAATGATCGCCTAGCAGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAACTGTTCGCTCACCTTTAGCTCAGTGCCTTTTGATCCGTTACACAAGTCAGGTTATTCATGAATCAAGCAATAATACACAGTCAGGGGAACGCCCTTTCTATGATTTTCTTGAGAGTTGCCTTCGCCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAGAGCAATAACAGAGCTCAATGGTGTCACAAGCCGAGAATTAACTCCAGCAATTACTGTTCTTCAGCTATTCTTAAGTTCGTCTAAACCAGTCTTGAGATTTGCTGCTTGTGACTTTGAAACTTTGCAGGTGGCAATGACACATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCTACCCTTGCTATTACTACGCTTCTGAAAACAGGAAATGAATCTAGTGTGGATCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCCTGAAGTTCCCTTTAAAATATCGATCTCTGATGAACTTCCTGAGCAACATTCTTAGGGAAGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTGATGCAAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGTGAGTTCACTTATTTGTCCACACAGATACTTCACTTCCTGGGAATTGAAGGACCAAAAACATCAGACCCGAGCAAATATATTCGTTACATTTATAATAGAGTACATCTTGAGAATGCAGTTGTTAGGGCCAGTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCAGTTGATGCGTTAAAGCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGGTTCGCGATAGGGCAACACTATACCTGAACACACTTGGAGGTGATGGTTCTGTTGTTGAGACTGATAAAGATGTAAAGGACTTCCTGTTTGGGCCATTTGATATCCCACTTGTCAATCTGGAGACTAGTTTGAAAAATTATGAGCCTTCAGAAGAAGCTTTTGACGTTAACTCTGTGCCCAAGGAGGTCAAGTCCCAGCCACTTGCAGAAAAGAAGGCCCCTGGTAAAAAGCCAACTGGTTTGGGTGCTCCTCCAAGTGGCCCCCCATCAACTGCAGATGCATATGAGAGGATGCTTTCGACCATTCCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAGTCCTCTGCACCCGTGGAGCTCACTGAAGCTGAGACAGAATATGCAGTTAATGTCATTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTATTGGAAGATGTTATTGTTACTGTGGATGATTCAGAAGCAGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCGGAGGGAGTGTCAACAGTTGGAAAATTTTCTAACATTCTGAAATTTATTGTTAAAGAGGTTGACCCAACCACAGGCGAGGCTGAAGATGATGGTGTCGAAGATGAATACCAGCTAGAGGATCTGGAGGTTGTTGCAGCAGATTATGTGCTGAAAGTGGGGGTTTCTAATTTTAGGAATGCATGGGAAAGCTTGGGCCCTGATTTTGAGCGAGTGGATGAGTATGGTCTTGGTCCTAGAGAGAGTTTGGCTGAAGCTGTAAATACTGTTATCAACCTACTTGGCTTGCAGCCCTGTGAGGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAGGGGTATTCATAGGGAATATAAAGGTGCTTGTACGGTTGTCTTTTGGACTTGATGGTCCAAAGGATGTTGCAATGAAACTGGCAGTCAGATCGGAGGATGAAACCGTCAGCGATGCCATTCATGAGATTGTGGCAAGCGGCTAG 2667 0.4331 MAQPLVKKDDDRDDEAEYSPFLGIEKGSVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLLSQIERYLKQAIVDKNPVVASAALISGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIHESSNNTQSGERPFYDFLESCLRHKSEMVIFEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAACDFETLQVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKEAGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENAVVRASAVSTLAKFGAAVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGPFDIPLVNLETSLKNYEPSEEAFDVNSVPKEVKSQPLAEKKAPGKKPTGLGAPPSGPPSTADAYERMLSTIPECANFGKLFKSSAPVELTEAETEYAVNVIKHIFDRHVVFQYNCTNTIPEQLLEDVIVTVDDSEADEFSEVFSKPLRSLPYDSPGQTFVAFEKPEGVSTVGKFSNILKFIVKEVDPTTGEAEDDGVEDEYQLEDLEVVAADYVLKVGVSNFRNAWESLGPDFERVDEYGLGPRESLAEAVNTVINLLGLQPCEGTEEVPPNSRSHTCLLSGVFIGNIKVLVRLSFGLDGPKDVAMKLAVRSEDETVSDAIHEIVASG 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00698 888 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 773 885 IPR009028 GO:0006886|GO:0016192|GO:0030117
Pumo10g00698 888 PIRSF Gamma-COP 7 886 IPR017106 -
Pumo10g00698 888 Gene3D - 334 552 IPR011989 -
Pumo10g00698 888 Gene3D - 23 315 IPR011989 -
Pumo10g00698 888 PANTHER COATOMER SUBUNIT GAMMA 1 886 IPR017106 -
Pumo10g00698 888 FunFam Coatomer subunit gamma 616 769 - -
Pumo10g00698 888 Gene3D Coatomer, gamma subunit, appendage domain 618 769 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Pumo10g00698 888 Pfam Adaptin N terminal region 29 541 IPR002553 GO:0006886|GO:0016192|GO:0030117
Pumo10g00698 888 FunFam Coatomer subunit gamma 23 316 - -
Pumo10g00698 888 MobiDBLite consensus disorder prediction 584 621 - -
Pumo10g00698 888 SUPERFAMILY Clathrin adaptor appendage domain 618 772 IPR013041 -
Pumo10g00698 888 FunFam Coatomer subunit gamma 334 542 - -
Pumo10g00698 888 Gene3D - 770 886 IPR012295 -
Pumo10g00698 888 FunFam Coatomer subunit gamma 770 886 - -
Pumo10g00698 888 SUPERFAMILY ARM repeat 31 541 IPR016024 -
Pumo10g00698 888 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 771 885 IPR032154 -
Pumo10g00698 888 Pfam Coatomer gamma subunit appendage platform subdomain 623 768 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00698 Pumo-Chr10 8961424 8968158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00698 K17267 - gmx:100814149 1665.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00698 10 8961424 8968158 Pumo10g00698 10 8961424 8968158 ECH