Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00694 ATGGAGGAGAAACGCGCTTTTCCACCGTCCAACGCCGCCGATTCACCGGCTTCCTCGAGGCGCCGTGGCGCCACTCAGAAGCGGAAAGCCAACGCTCTCAACGCCTCGAATTCTTCGTCCACACCTTCCAAACGCATTACTCGCGACAAGGCTTTGCTTTCACACACTCCTCCTTTCCCCAATGGTCCCTTGACTAGGGCTCGTCAAATCCCTCCCGCCACCGCGTCCTGCGGCGCTCCTGCTTCCGCTCCCGCCGCCGCCTTGAAACACTCCGAACGCGCGCCGGATTCCGCTGCGCTGGCCGAGCAGCTCAGAAAGCAGAGCGAGTGGGAGGCTCTGGAAGCTGCAATTGAAGCTCAGTTTGAAGCTGTTAGATCTCGTGATTCCAATGCTCACGTGGTTCCCACTCATTGCGGTTGGTTTTCATGGACAAATATCCATCCAATTGAGAAGCGTACATTGCCTTCTTTCTTTAATGGCAAAACTGAAAATTGGACTCCTGATACATATATGGAGATACGGAATGATATTATGAATAGGTTTCACACAAATCCAAATGTACAGATTGAATTGAAAGATTTGTCAGAGATTAATGTTGGAGACTTGGATTCTAGGCAAGAGGTAATGGAGTTTCTGGATTATTGGGGTTTAATTAATTTCCACCCATTACTTTCTACGGGTTCTGCTGTGCCCAGCACAGATGATGACAGGGTAGCAGAAAAGAATTCCTTGCTTGAAAAATTGTATCGCTTTGAAAGTCAGCAATTCCCACCTATTGCTCAGAAGACTAGCCTAATGACTCCAACTATGACGTCTGGCTTGTTTCCAGAGTCTACAGTTGCTGAAGAGTTGGTGAAACAGGAAGGACCAGCAGTTGAGTACCATTGCAACTCTTGTTCTGCTGACTGTTCTCGCAAACGCTACCATTGCCAGAAGCAGGCAGATTTTGATCTATGTACCGATTGCTTCAGTAATGGAAAATTTGGCTCTGGCATCTCTTCTTTGGATTTTATACTCATGGAACCAGCAGAAGTTCCAGGGGTTAGTGGTGGAAAGTGGACTGATCAGGAGACCCTCTTGCTCCTTGAAGCACTAGAACTATATAAAGAAAATTGGAATGAAATTGCAGAACACGTTGCAACGAAATCCAAAGCTCAATGCATATTACACTTTGTTCAAATGCCAATTGAGGATGCCTTTGTTGACTGTGGTGATGATGTTGATGCAAGTTGCAAAGAGAATATAGATCCAGCTACTTCTAACAATGATTCATCTGTCCACAAAGATGCTTTAGAATTTGATGAGAATAAGATTAGTGATAGCATTGATGACCATGTTCCGACTCTACAAAATGAAACTGCTAAGGCTGATGATGTTAATAATGTGAAAGTTAATCGGGAGACTTCAAAGCCAGGCGATGTTGATGATGAGAAAACTTGTGAGCAAACTTCTAAATCAGAAGATGATGTCAAATTAAAATTTGGTAAGGAAGAAGGCAACGGCTATTCTCTAAATGCTCTTGAGGAAGCATTTACATCTGTTGGCTATTCTCCTGGATCCAATGGGCCATCATCATTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGTTTTCCTTGCATGCTTGGTGGGTTCTGATGTAGCTGTTGCTTCAGCTCATAGCTCCTTAAAATCCATGTCTGTAAATTCTCCTGGCACTGTGCTTTCTGCAAGGCATTGCTTTCTTCTGGAAGATCCACCTGTTGATAAGGAACCAATAAGATACGAGAGGCATGTGATATTATTTTGA 1791 0.4472 MEEKRAFPPSNAADSPASSRRRGATQKRKANALNASNSSSTPSKRITRDKALLSHTPPFPNGPLTRARQIPPATASCGAPASAPAAALKHSERAPDSAALAEQLRKQSEWEALEAAIEAQFEAVRSRDSNAHVVPTHCGWFSWTNIHPIEKRTLPSFFNGKTENWTPDTYMEIRNDIMNRFHTNPNVQIELKDLSEINVGDLDSRQEVMEFLDYWGLINFHPLLSTGSAVPSTDDDRVAEKNSLLEKLYRFESQQFPPIAQKTSLMTPTMTSGLFPESTVAEELVKQEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFSNGKFGSGISSLDFILMEPAEVPGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKSKAQCILHFVQMPIEDAFVDCGDDVDASCKENIDPATSNNDSSVHKDALEFDENKISDSIDDHVPTLQNETAKADDVNNVKVNRETSKPGDVDDEKTCEQTSKSEDDVKLKFGKEEGNGYSLNALEEAFTSVGYSPGSNGPSSFAEVGNPVMALAVFLACLVGSDVAVASAHSSLKSMSVNSPGTVLSARHCFLLEDPPVDKEPIRYERHVILF 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00694 596 SMART sant 349 397 IPR001005 -
Pumo10g00694 596 Pfam Zinc finger, ZZ type 293 328 IPR000433 GO:0008270
Pumo10g00694 596 SUPERFAMILY RING/U-box 292 340 - -
Pumo10g00694 596 CDD ZZ_RSC8 294 338 IPR041984 -
Pumo10g00694 596 ProSiteProfiles Zinc finger ZZ-type profile. 291 345 IPR000433 GO:0008270
Pumo10g00694 596 FunFam SWI/SNF complex subunit SMARCC2 isoform C 349 399 - -
Pumo10g00694 596 Gene3D - 284 333 IPR043145 -
Pumo10g00694 596 ProSitePatterns Zinc finger ZZ-type signature. 296 322 IPR000433 GO:0008270
Pumo10g00694 596 MobiDBLite consensus disorder prediction 29 47 - -
Pumo10g00694 596 CDD SANT 369 394 IPR001005 -
Pumo10g00694 596 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 346 387 IPR017930 -
Pumo10g00694 596 SUPERFAMILY Homeodomain-like 139 221 IPR009057 -
Pumo10g00694 596 Pfam Myb-like DNA-binding domain 351 393 IPR001005 -
Pumo10g00694 596 SUPERFAMILY Homeodomain-like 347 400 IPR009057 -
Pumo10g00694 596 ProSiteProfiles SANT domain profile. 348 399 IPR017884 -
Pumo10g00694 596 Pfam SWIRM domain 135 220 IPR007526 GO:0005515
Pumo10g00694 596 MobiDBLite consensus disorder prediction 465 484 - -
Pumo10g00694 596 PANTHER SWI/SNF COMPLEX-RELATED 21 579 - -
Pumo10g00694 596 Gene3D - 348 399 - -
Pumo10g00694 596 SMART zz_5 290 334 IPR000433 GO:0008270
Pumo10g00694 596 Gene3D - 138 222 IPR036388 -
Pumo10g00694 596 ProSiteProfiles SWIRM domain profile. 132 229 IPR007526 GO:0005515
Pumo10g00694 596 ProSiteProfiles Myb-like domain profile. 345 395 IPR001005 -
Pumo10g00694 596 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00694 Pumo-Chr10 8945894 8951331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00694 294 391 EF-hand Containing Proteins AT3G07740 34.483 2.85e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00694 K11649 - gmx:100799723 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00694 10 8945894 8951331 Pumo10g00694 10 8945894 8951331 ECH