Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00323 ATGCATATGTGGAAGCAGATCAGAGACAGGGAAGGTGGGAAAGTGCATGGAAATAAATTCGCGAAGCGCATAAAATCCAATCGCATTTCGCAACTCCAATTGTCGAATCACAAAGAAGTGGTGTCCCCTCACAAAGGCGCCATCAACTCCCTTGAGATTGATTCCACAGAGGGAAGATATTTGCTATCCGCGGCCTCCGATGCGTCGGTAGCCGTATACGACGTTCAACGACCCACCGTTTACGAAGCAGGCGGCCTTATATCGAAACACAGGTCCATATTTGTCGTTGACAAGCAGCACCAACAGGGTCATAAATATGCGGTCTCCACAGCTATATGGTATCCCATTGACACCGGCTTGTTCGTCACTGGCTCATACGATCATCACATTAATGTTTGGGATACCAATACCACCCAGGTGGTTGTGAATTTCAAAATGCCTGGAAAGGTTCATAGGACTGCAATGTCCAATTTGTCAACGTCTCACATGCTTATTGCCGCTGGCACTGAGGATGTCCAAGTTCGCCTTTGTGATATTGCTTCTGGGGCTTTTGCTCACACCTTGTCTGGTCACCGTGATGGAGTAATGACTGTTGAATGGTCTAATTCAAGTGAATGGGTCTTGGTTACTGGGGGATGTGATGGTGCAATACGTTTTTGGGACATTAGGCGCGCTGGCTGTTTCCAACTTTTAGATCAATCTCGGACTCAGCTTGGAAGACGCCCACCTATACTCAAACGCTCCATGATAACTAAGGATTCAAGTACAAAATTACGTGCTGCTCAAAAGAAACATGCTAATGGAAGTGGTAGCAGACAACAACCAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAGGTTACATCCAGGAATGTTGTCTACTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGCGACCGAAGATGGCATGTATCTACTAAGCGCAGGGTCTGATTCAAGATTGAGGTTGTGGGATGTTGAATCTGGCTGTGACACACTTGTGAACTTTGAAACAGTTCGCCTGCAAATAAACAAACCTCTTCAATTAGCCACCACTCAAGATTCAACCCTTGTTTTTGTTCCATGCATGAGATCTGTGAAAGCATTTGACATGTGGTCTGGGAACACATACACGATATTACGTGGCCACTATGAATGTGTGAACTCTTGCTGGTTTAATCAACAAGATCAGGAACTGTACACTGGTGGAAATGATAGACAAATTCTTGTCTGGTCACCTGCTAGATCAATCGCTTATGAAATGGATGAAGGACCTGCTGAGGATCAGGATAACTGGAGTAGCTGA 1326 0.4563 MHMWKQIRDREGGKVHGNKFAKRIKSNRISQLQLSNHKEVVSPHKGAINSLEIDSTEGRYLLSAASDASVAVYDVQRPTVYEAGGLISKHRSIFVVDKQHQQGHKYAVSTAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRTAMSNLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQLLDQSRTQLGRRPPILKRSMITKDSSTKLRAAQKKHANGSGSRQQPIGRVPSKGPMKQRLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESGCDTLVNFETVRLQINKPLQLATTQDSTLVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQQDQELYTGGNDRQILVWSPARSIAYEMDEGPAEDQDNWSS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00323 441 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
Pumo10g00323 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 419 - -
Pumo10g00323 441 FunFam Transducin/WD40 repeat-like superfamily protein 4 269 - -
Pumo10g00323 441 Pfam WD domain, G-beta repeat 301 332 IPR001680 GO:0005515
Pumo10g00323 441 Pfam WD domain, G-beta repeat 102 134 IPR001680 GO:0005515
Pumo10g00323 441 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Pumo10g00323 441 Pfam WD domain, G-beta repeat 384 419 IPR001680 GO:0005515
Pumo10g00323 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 419 IPR001680 GO:0005515
Pumo10g00323 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 137 - -
Pumo10g00323 441 FunFam Excision repair cross-complementation group 8 281 422 - -
Pumo10g00323 441 Gene3D - 3 422 IPR015943 GO:0005515
Pumo10g00323 441 SMART WD40_4 380 419 IPR001680 GO:0005515
Pumo10g00323 441 SMART WD40_4 181 221 IPR001680 GO:0005515
Pumo10g00323 441 SMART WD40_4 89 134 IPR001680 GO:0005515
Pumo10g00323 441 SMART WD40_4 34 74 IPR001680 GO:0005515
Pumo10g00323 441 SMART WD40_4 290 332 IPR001680 GO:0005515
Pumo10g00323 441 MobiDBLite consensus disorder prediction 254 288 - -
Pumo10g00323 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 143 IPR001680 GO:0005515
Pumo10g00323 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 41 83 IPR001680 GO:0005515
Pumo10g00323 441 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Pumo10g00323 441 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Pumo10g00323 441 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Pumo10g00323 441 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 3 441 IPR042238 GO:0006283
Pumo10g00323 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 336 - -
Pumo10g00323 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 223 - -
Pumo10g00323 441 SUPERFAMILY WD40 repeat-like 40 421 IPR036322 GO:0005515
Pumo10g00323 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 341 IPR001680 GO:0005515
Pumo10g00323 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 223 IPR001680 GO:0005515
Pumo10g00323 441 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00323 Pumo-Chr10 4351949 4355346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00323 44 240 Miscellaneous Gene Families AT5G08390 23.350 1.59e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00323 K10570 - gmx:100790433 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00323 10 4351949 4355346 Pumo10g00323 10 4351949 4355346 ECH