Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00308 ATGTCATGGCTGGCTCGTTCCTTCGCAAACTCTCTCCGAATCGATGGTGACGGAGACGACGAAAACGACACCGTACTGGATCCACCTACCACGTCATCGAGAGACCCCCCGCAACAGCAACACGAGGCACGAGAAAATGCATTCGGATCAGAAGCTGGAGCTGAAGACGAAGAAACGAAAGAGCGTGGAGTCAAAGAGGACCTCGACGAAATCAAGCAAACCCTAACTCGTCAATTTTGGGGAATGGCCTCCTTCCTCGCTCCACCGCCATCAGATTCTCATTCTCAATCCGATCCCTCTTCGTTCATTTCCGATCAATCCAATCATCGCGCTGTTTCTCCGAAGGAAGAACCGCAATTGGATGAGGCTGCGATTTCCAATCACTCTAATTCGGTTTCGTTAGGATCCGATTCGGAAGGGGATTGTGGTCTCGAGCAACGCGCGGTTGGAATTACCGAAGAGGTGTTGGTCTTCGCGATGAACATTGCTATGCATCCCGAGACGTGGTTGGATTTTCCTATTGATGAGGAAGACGACACCGACGATTTTGACATGTCTGATGCACAACAAGAGCATGCCGCGGTTGTTGAAAGACTAACTCCTAGATTAGCTGCGCTCAGAATTGAACTATGTCCTTGCCATATGAGTGAAAGTTATTTCTGGAAAGTCTATTTTGTTCTTTTGCATTCAAGGCTTAATAAAGAAGATGCAGGGATTTTGTCTACACCCCAGGTAATGGCAGCCAGAGCAATGTGGATGCAGGAATTGCATAAACAAACAAAGCCTGAATTTGAAATTTTCGGAAGGAGTGCTTCCTATCCAAGAGACAATGCACATCATGATGACTTTACTCCCAACTTATTAGATGACGCTTATTCTCATGACATGCCTAATCAGACATATGGATATAGAACAACCTCTTTGCCCATGATGCCAGATTATGAGACTGAGAAGCACATGGTCGAAAGTTCTGGAACGCATTTCACCGATAAGTCTGTTATTGAGGAAAATTCAATTATTAAAACTGAAAACAAGGATCTAAAATGTGGTCGACCCTCTCAAATTATTATTCAGGATTATGATGATGATGATGATGATTGGCCAGAGGAAGATTCTGATTTAGGGGGATATGGTGGAACAACTCACCCCATGGTGAATGAAGAAGACATATCTTTTAGCGATCTCGAGGATGATGATTATGGCATTAAACCTGTTAGTTCCAGTACAGCTTCGAAGGTGCTATGA 1245 0.4474 MSWLARSFANSLRIDGDGDDENDTVLDPPTTSSRDPPQQQHEARENAFGSEAGAEDEETKERGVKEDLDEIKQTLTRQFWGMASFLAPPPSDSHSQSDPSSFISDQSNHRAVSPKEEPQLDEAAISNHSNSVSLGSDSEGDCGLEQRAVGITEEVLVFAMNIAMHPETWLDFPIDEEDDTDDFDMSDAQQEHAAVVERLTPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKEDAGILSTPQVMAARAMWMQELHKQTKPEFEIFGRSASYPRDNAHHDDFTPNLLDDAYSHDMPNQTYGYRTTSLPMMPDYETEKHMVESSGTHFTDKSVIEENSIIKTENKDLKCGRPSQIIIQDYDDDDDDWPEEDSDLGGYGGTTHPMVNEEDISFSDLEDDDYGIKPVSSSTASKVL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00308 414 ProSiteProfiles BSD domain profile. 180 232 IPR005607 -
Pumo10g00308 414 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 400 - -
Pumo10g00308 414 MobiDBLite consensus disorder prediction 89 109 - -
Pumo10g00308 414 MobiDBLite consensus disorder prediction 358 414 - -
Pumo10g00308 414 Gene3D BSD domain 148 239 IPR035925 -
Pumo10g00308 414 SMART wurzfinal6 180 232 IPR005607 -
Pumo10g00308 414 SUPERFAMILY BSD domain-like 150 236 IPR035925 -
Pumo10g00308 414 MobiDBLite consensus disorder prediction 48 67 - -
Pumo10g00308 414 Pfam BSD domain 180 236 IPR005607 -
Pumo10g00308 414 MobiDBLite consensus disorder prediction 1 67 - -
Pumo10g00308 414 MobiDBLite consensus disorder prediction 84 119 - -
Pumo10g00308 414 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00308 Pumo-Chr10 4190848 4194476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00308 150 230 EF-hand Containing Proteins AT1G69030 31.868 2.57e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00308 - - gmx:100794286 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00308 10 4190848 4194476 Pumo10g00308 10 4190848 4194476 ECH