LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g00288	ATGTTAGAAGACGCCGTCATTGACACTGTCGGGCTCGTGTCTCATAGTTCTTGCCCTTATAAATACACAACCCTAGCTGACTATTATTTTCACCATACCTCCCTAAGTTTTTCACATGTTCCAAAACCCTTGATCTCACTCGCTCACTTGTGTTTCCGGTTCTCGAGTTTGCTTACGCAGACTAATTTAGTAGCTAGGTACTTTGTAGTGTTTGTAGTGAACATGCTATCTAGGAAGGCTAGTCATGACTCTCATGGCCAAGACTCTTCTTACTTTCTAGGATGGCAAGAGTACGAGAAGAATCCTTACCACCCCATTCAAAATCCAACCGGAATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTTGACCTTCTTAAATCATGGCTTCGAAGAAATCCTGACATAGTGGGAATGAAGAAAGATGGAATATCCGTATTTAGAGAGCTTGCTCTGTTCCAAGATTACCATGGGTTACCTGCTTTAAAAAATGTACTGGTGGATTTCATGGGAAATATAAGAGGAAATGGAATAAAATTTGGTTCGGAGAAGCTCGTCCTCACAGCCGGCGCAACTCCCGCAAATGAGATTCTGATGTTTTGCCTTGCTGATCCAGGGGAGGCTTTCATTCTTCCCACACCTTATTATCCTGGGTTTGATAGAGATCTGAAATGGAGAACCGGGGTCGAAATTGTTCCAATGCATTGCTCAAGCACAAATGACTTCCGAATCACTTCCTCTGCTTTAGAAGAAGCCTACCAACAAGCACAAAAACTGAATCTCAAAGTCAAAGGGGTCATAGTAACCAACCCCTCAAACCCACTGGGCATAACCATGACCAAAACTGAACTGAACCACCTAGTAGATTTCGCAATTAACAAGAACATTCACATAATAAGCGACGAAATCTACTCGGGGACGGTCTTCGACTCACCCAGATTCATAAGCATCACAGAAGTTGTGAACGAGAGAATTAGTACTGTCAACAATAATAGCATTTGGAACCGCATTCACATTGTTTATAGTCTGTCCAAAGACCTTGGCATACCGGGATTTCGGGTGGGAATGATTTACTCCAATAACGAAACGGTTGTGGCTGCAGCGACCAAAATGTCAAGCTTTGGATTGGTGTCCTCACAAACTCAGTATTTGGTGGCCAACTTGCTTAAGGACAAGAAATTCACTTTAAAGTACATGGAAGAGACTCAGCGGAGACTGAAGAGGCGCAAGGAGATGCTTATGTCTGGCCTCAGGAACGCGGGGATTAGGTGTCTGAAAAGTAATGCTGGGTTGTTCTGTTGGGTTGACATGAGACATCTATTAGGCTCTGCCACTTTTGAGGCAGAGAAGGAGCTTTGGATGAAGATTCTTTGCCAAGTTGGGTTGAACATATCTCCTGGCTCTTCTTGCCATTGCTATGAACCTGGGTGGTTCAGGGTTTGCTTTGCCAACATGTCTGAAGACACGTTAAAAGTTGCAATGCGACGGATGAAGGCTTTTACAGACTCAACCATCTCTGCTGTCAACGTTTTGAGAACTGCTAGAACAACAGACAACTTAGGGAGGAGGTTTTGGGGTTGCAAACATTTCATCTTTGGCCTGAATGGTTGGGTTGCGGTTCGTGCAGCTGAATGGGTTTGGGTGGGTGGAGGTGGTTGGGTTGAGGTTGGTGCAGCTGAATGGGTTTGGGTGGATGCATCTGGGTGGCTTTGGGTTGTTGTATCTGTTGTCTCACAATATTGTCTTGTGCCACTAGAGTTTCTTTTCCAACATGTGCCTGACTTTTCCCAATATTATCTTTTGCCACGGGAGGTTGTGGGGTTACATGTGCATGACCATCACCAATAG	1851	0.4446	MLEDAVIDTVGLVSHSSCPYKYTTLADYYFHHTSLSFSHVPKPLISLAHLCFRFSSLLTQTNLVARYFVVFVVNMLSRKASHDSHGQDSSYFLGWQEYEKNPYHPIQNPTGIIQMGLAENQLSFDLLKSWLRRNPDIVGMKKDGISVFRELALFQDYHGLPALKNVLVDFMGNIRGNGIKFGSEKLVLTAGATPANEILMFCLADPGEAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSTNDFRITSSALEEAYQQAQKLNLKVKGVIVTNPSNPLGITMTKTELNHLVDFAINKNIHIISDEIYSGTVFDSPRFISITEVVNERISTVNNNSIWNRIHIVYSLSKDLGIPGFRVGMIYSNNETVVAAATKMSSFGLVSSQTQYLVANLLKDKKFTLKYMEETQRRLKRRKEMLMSGLRNAGIRCLKSNAGLFCWVDMRHLLGSATFEAEKELWMKILCQVGLNISPGSSCHCYEPGWFRVCFANMSEDTLKVAMRRMKAFTDSTISAVNVLRTARTTDNLGRRFWGCKHFIFGLNGWVAVRAAEWVWVGGGGWVEVGAAEWVWVDASGWLWVVVSVVSQYCLVPLEFLFQHVPDFSQYYLLPREVVGLHVHDHHQ	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g00288	616	SUPERFAMILY	PLP-dependent transferases	76	501	IPR015424	-
	Pumo10g00288	616	FunFam	1-aminocyclopropane-1-carboxylate synthase 3	135	392	-	-
	Pumo10g00288	616	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	343	356	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Pumo10g00288	616	FunFam	1-aminocyclopropane-1-carboxylate synthase 2	369	497	-	-
	Pumo10g00288	616	Pfam	Aminotransferase class I and II	113	497	IPR004839	GO:0009058\|GO:0030170
	Pumo10g00288	616	Gene3D	Aspartate Aminotransferase, domain 1	101	497	IPR015422	GO:0003824
	Pumo10g00288	616	Gene3D	-	135	392	IPR015421	GO:0003824
	Pumo10g00288	616	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	148	164	-	-
	Pumo10g00288	616	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	261	285	-	-
	Pumo10g00288	616	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	337	361	-	-
	Pumo10g00288	616	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	207	228	-	-
	Pumo10g00288	616	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	185	205	-	-
	Pumo10g00288	616	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	297	320	-	-
	Pumo10g00288	616	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	369	392	-	-
	Pumo10g00288	616	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	115	141	-	-
	Pumo10g00288	616	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	74	500	-	-
	Pumo10g00288	616	CDD	AAT_like	149	500	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g00288	Pumo-Chr10	3908133	3921633	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g00288	K01762		-	gmx:100803507	819.305

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g00288	10	3908133	3921633	Pumo10g00288	10	3908133	3921633	ECH