LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g00269	ATGGCGGAGGAAGCACAGTACTCATCGGGAACCGAGACCACGCCCCTCAAGCGTAAGTACGAAGACCAACCCTCCGGCATCGAGCTCGCCAAGCAGCGTGCTCAGGAAGTCGCCGCTCGCCTCCTCAGCGGCGCTCCTCCTCCGCCCGTCGACGCCAAGCGTCCCAAATCCGATAACGGCGCTCCTACCACCGGCTTCGATTCTCTCGATTCGAAGCCTCAGTATTCAGCGGTTCCTCCTGTCTCCTACGGTCACCAAGGTACGAGCAAGAAGATAGATATCCCTAATGGCAGGGTTGGTGTCATTATTGGTAAAGGTGGAGAGACTATTAAGTATCTCCAGTTGCAGTCTGGTGCCAAAATTCAGGTTACTCGTGATATGGATGCGGACCCTAATTCTCAGACTAGGATGGTTGAGCTTATGGGCACTTCTGAGGCAATTGCCTCTGCTGAGAAACTCATCAATGAAGTTCTTGCTGAGGCTGAATCTGGGGGTTCTGGCACTGTTGCTCGAAGACTGACTGGACAAGCTGGGTCGGATGAATTTGTCATGAAAATCCCAAATAATAAGGTTGGCCTTATAATTGGTAAAGGAGGAGAAACGATAAAGAATATGCAAGCTTCTACTGGAGCACGGATTCAGGTGATACCTCTGCATCTTCCCCCGGGTGACACATCAACTGAAAGAACATTAAAAATTGATGGTACTCCTGAGCAAATTGAGTCTGCAAAGCAGTTGATTAATCAAGTCATCAGTGGTGAGAATCGTCTTAGAAATCCTGCAATGTCTGGTGGTTATCCTCAGCAAGGTTACCAATCTCGACCACCCTCTAACTGGGCTCCCCCTGCTCCAATGCAGCAACCTGGTTATGGCCATGTGCAACCTGGAGCATACTCTGGTGGTCCATCATCCCAATATAACATGCCTCAGCCACCATATGCAGGTTATCCTCCCCAGCAACCTGGTGGATATTCCACCAATTGGGATCAGTCTACTGCACCACCTCACCAGCAGTCTACTGCTGGTGGTTATGATTACTATAGTCAACAGCCACAGCAACCACAAAATCCTGGGGGTCCTGCACCTCCAGCTGATGGCTCTGCATACAATTACAGTCAGCCACCTTCCTCTGGTTATAACCAATCAGGACAGCAGGGTTATGCACAGGACAGCTATAATGCATATAATGCGCAATCACAATCAGGGTATGGGCAGCCACCGACATATGATCAGCAGCAAGGCTATGGCAGTGGGGGTAACCCAGTGCAAGAGGGCAACACTGCAAACTATGCATCACAGGGTGATTCAGCCCAAGCTCCATCTGCCCAACCGACTACTGTTGTGCAGCAAGGTTATCCTACCAACCAACAGCCCAGCTCGAATACTGCCAACTATCCACCTCAAGGAACTCCTCAGCCAGGTTATGGGGTTCCCCCTACATCCCAAGCAGCTTATGGCAATCAACAACCGGGTTATGGACCTGGTTATGGAGCCCCTCAATCTCAAAAACCCAGTGGCAATCCACCTGTTTATGGACAGTCGCAGTCTCCTAGTGCAGCAGGAGGCTATGGTCAGCCAGCATATCCTGTGCAGCCCCCACCGTCTGGGTATGCTCAACCAGAATCAGGTGCTCAGAGAGCACCACCATCTGGTTATGGTGGTGCAGTGCAACCAGGGTATGGTCCTCAAACATATGGTCAGGCACCGCCTCCATACAGCAACAGCTCTTATGGTGCTGGTTATACTCAGGCTTCTGCGTATACTGGTGATGGTAATGCCAATGGGAATACTCAGGCTCCTCAGAGTGCCGTTGCTAAAGCTTCACCTCAGAGTTGA	1836	0.5098	MAEEAQYSSGTETTPLKRKYEDQPSGIELAKQRAQEVAARLLSGAPPPPVDAKRPKSDNGAPTTGFDSLDSKPQYSAVPPVSYGHQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSQTRMVELMGTSEAIASAEKLINEVLAEAESGGSGTVARRLTGQAGSDEFVMKIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKQLINQVISGENRLRNPAMSGGYPQQGYQSRPPSNWAPPAPMQQPGYGHVQPGAYSGGPSSQYNMPQPPYAGYPPQQPGGYSTNWDQSTAPPHQQSTAGGYDYYSQQPQQPQNPGGPAPPADGSAYNYSQPPSSGYNQSGQQGYAQDSYNAYNAQSQSGYGQPPTYDQQQGYGSGGNPVQEGNTANYASQGDSAQAPSAQPTTVVQQGYPTNQQPSSNTANYPPQGTPQPGYGVPPTSQAAYGNQQPGYGPGYGAPQSQKPSGNPPVYGQSQSPSAAGGYGQPAYPVQPPPSGYAQPESGAQRAPPSGYGGAVQPGYGPQTYGQAPPPYSNSSYGAGYTQASAYTGDGNANGNTQAPQSAVAKASPQS	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g00269	611	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	89	165	IPR036612	GO:0003723
	Pumo10g00269	611	ProSiteProfiles	Type-1 KH domain profile.	179	247	-	-
	Pumo10g00269	611	FunFam	KH domain-containing protein	174	275	-	-
	Pumo10g00269	611	MobiDBLite	consensus disorder prediction	320	354	-	-
	Pumo10g00269	611	MobiDBLite	consensus disorder prediction	500	521	-	-
	Pumo10g00269	611	MobiDBLite	consensus disorder prediction	567	611	-	-
	Pumo10g00269	611	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	182	254	IPR036612	GO:0003723
	Pumo10g00269	611	ProSiteProfiles	Type-1 KH domain profile.	87	154	-	-
	Pumo10g00269	611	CDD	KH-I	90	155	-	-
	Pumo10g00269	611	SMART	kh_6	86	159	IPR004087	GO:0003676
	Pumo10g00269	611	SMART	kh_6	178	252	IPR004087	GO:0003676
	Pumo10g00269	611	Pfam	KH domain	91	156	IPR004088	GO:0003723
	Pumo10g00269	611	Pfam	KH domain	183	248	IPR004088	GO:0003723
	Pumo10g00269	611	PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	74	463	-	-
	Pumo10g00269	611	MobiDBLite	consensus disorder prediction	1	89	-	-
	Pumo10g00269	611	MobiDBLite	consensus disorder prediction	258	611	-	-
	Pumo10g00269	611	Gene3D	K Homology domain, type 1	175	277	IPR036612	GO:0003723
	Pumo10g00269	611	Gene3D	K Homology domain, type 1	82	174	IPR036612	GO:0003723
	Pumo10g00269	611	MobiDBLite	consensus disorder prediction	369	488	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g00269	Pumo-Chr10	3643589	3648963	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g00269	K13210		-	gmx:100797476	912.524

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g00269	10	3643589	3648963	Pumo10g00269	10	3643589	3648963	ECH