Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00249 ATGGATTCTTCACAAGGGTCTACCATTGCTGGTTTCGTGGACAAGGCATCCATTCAGAGGAATGAATCTAGTTTTGATGGCGTTCCTGTCTATGTGAAGGAACTAATTGCTGGAGGCTTTGCTGGTGCGCTTTCTAAGACCAGTGTTGCACCCCTCGAACGGGTCAAGATACTTTGGCAGACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTTTGAGTAAGTTACTAAAGCATGAAGGTTTTCTGGGATTATATAAGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTTTATGACATACGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCTGTGTTAGGTTCGGGCCCTTTTATTGATCTTTTAGCAGGCTCTGCTGCAGGAGGAACTTCAGTTTTATGTACCTACCCCTTGGATCTTGCTCGTACCAAACTTGCTTACCAGGTGGCAGACACAAGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAACCTGCACATAATGGCATTAAAGGTGTGCTTACAAGTGTCTATAAGGAAGGGGGAGTTCGTGGACTTTACAGGGGTGCAGGACCAACCCTTACCGGAATTCTTCCATATGCTGGTTTAAAGTTCTACATGTATGAGAAATTGAAGACTCATGTTCCTGAAGAACATCAAAAGTCCATTATGACGCGTCTTTCTTGTGGAGCTCTAGCTGGATTGTTTGGGCAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGGTTGGCAGCCTGCAAAATGCTGCTCATGAGGATGCCAGATACAAAAATACATTAGACGGACTTAGGACGATTGCTCGTAATCAAGGATGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCTTGGCTTGGCATACCACCTCAACAAAAGTCTCGATCAGTTTCAGCAGCATGA 1017 0.4366 MDSSQGSTIAGFVDKASIQRNESSFDGVPVYVKELIAGGFAGALSKTSVAPLERVKILWQTRTPGFHSLGVYQSLSKLLKHEGFLGLYKGNGASVIRIVPYAALHFMTYERYKSWILNNYPVLGSGPFIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVADTRGSIKDGMKGVQPAHNGIKGVLTSVYKEGGVRGLYRGAGPTLTGILPYAGLKFYMYEKLKTHVPEEHQKSIMTRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNAAHEDARYKNTLDGLRTIARNQGWRQLFHGVSINYIRIVPSAAISFTTYDMMKSWLGIPPQQKSRSVSAA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00249 338 PRINTS Mitochondrial carrier protein signature 90 110 IPR002067 GO:0055085
Pumo10g00249 338 PRINTS Mitochondrial carrier protein signature 240 262 IPR002067 GO:0055085
Pumo10g00249 338 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Pumo10g00249 338 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Pumo10g00249 338 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Pumo10g00249 338 PRINTS Mitochondrial carrier protein signature 197 215 IPR002067 GO:0055085
Pumo10g00249 338 ProSiteProfiles Solute carrier (Solcar) repeat profile. 231 323 IPR018108 -
Pumo10g00249 338 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 224 IPR018108 -
Pumo10g00249 338 Pfam Mitochondrial carrier protein 231 324 IPR018108 -
Pumo10g00249 338 Pfam Mitochondrial carrier protein 31 119 IPR018108 -
Pumo10g00249 338 Pfam Mitochondrial carrier protein 127 226 IPR018108 -
Pumo10g00249 338 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 115 IPR018108 -
Pumo10g00249 338 SUPERFAMILY Mitochondrial carrier 32 319 IPR023395 -
Pumo10g00249 338 Gene3D Mitochondrial carrier domain 29 325 IPR023395 -
Pumo10g00249 338 PANTHER SOLUTE CARRIER FAMILY 25 31 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00249 Pumo-Chr10 3372976 3378363 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00249 107 333 Organic Solute Cotransporters AT1G14560 68.831 4.62e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00249 - - gmx:100784421 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00249 10 3372976 3378363 Pumo10g00249 10 3372976 3378363 ECH