Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00236 ATGGCGGATCCCTACTACTCATACGGTGCTCCGGCAGCCGCTGACGGAGCTAGCATTGCAAGGAGCAGCTTTGCTGGTTATATTCCATCTGAGCCTTCAAATTCCACTGAATTGAGGGGCATTGGATCAGATTACCTGCAGAGAGATATAGGCTTGTTTTACAGTGCTGATGATGCCTTGGGCTCCAGAGTTCATTCTGAGCCTGTTAAGGGTTATTCACCTCTTGCAGATCCTGATCTGACTAAAAAACGAGATACAACGCCGTTGGGCATTAAGCATGGTGTTCCTGATGTAAACAGTGAAAGACCAGCCTCTAAAAGCAGTTATGACGGTCTACCAACTTCGGCGGCTGACTCAAACATTCTGTTTGTTGGTGGACTTCCAAAAGACTGCAGTAGAAGGGAAGTCGGACATCTTTTCCGTCCCTTTATTGGCTATAAGGATATCAAAGTTGTTCACAAGGAGCCTAGACGTAGTGGAGACAAGGCTGTGACTTTGTGTTTTGTGGAGTTTCTTGACTCCAAATGTGCTCTCACTGCCATGGAAGCCCTGCAAGGCTACAAGTTTGATGATAAAAAGCCTGATTCACCAACCTTAAAAATACAGTTTGCACACTTTCCTTTCCGTCTACCATCTGATCATGGCAACAGCTTATCAACATGA 663 0.457 MADPYYSYGAPAAADGASIARSSFAGYIPSEPSNSTELRGIGSDYLQRDIGLFYSADDALGSRVHSEPVKGYSPLADPDLTKKRDTTPLGIKHGVPDVNSERPASKSSYDGLPTSAADSNILFVGGLPKDCSRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAVTLCFVEFLDSKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFRLPSDHGNSLST 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00236 220 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 76 208 - -
Pumo10g00236 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 206 IPR000504 GO:0003723
Pumo10g00236 220 CDD RRM_AtNSRA_like 119 204 - -
Pumo10g00236 220 MobiDBLite consensus disorder prediction 64 112 - -
Pumo10g00236 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 193 IPR000504 GO:0003723
Pumo10g00236 220 Gene3D - 115 206 IPR012677 -
Pumo10g00236 220 SUPERFAMILY RNA-binding domain, RBD 89 193 IPR035979 GO:0003676
Pumo10g00236 220 SMART rrm1_1 121 202 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00236 Pumo-Chr10 3229829 3232837 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00236 - - gmx:100816255 394.43