Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00225 ATGAAAGCATCCGCAGTATCGTCACTGCTTAACTTGAAATCTTTCGGTCTCCACCACCACTCTCCCACTTCCAACCTCCGCCACTCTCCAATCATGGCCGCATCCGTCAACTCCGAACGAGCCCGCGCCCCACCCGCCATTCCCATGCCCCCTCCCCCTCTCTCCAAGTTCAAAATCGGCCTCTGTCAACTCTCCGTCACCCCCGACAAAGACAGGAACATCGCCCACGCGCGCACCGCCATTCAGGATGCTGCATCAAAGGGCGCCCAGCTTGTTCTTTTGCCTGAAATTTGGAACAGTCCTTATTCGAATGACAGTTTCCCTGTCTACGCTGAGGATATTGACGCTGCTGCTTCTCCTTCCACTGCCATGCTATCTGAACTCTCTCGTCTCTTGAAAATCACCATCGTTGGTGGTTCCATTCCAGAACGTTCTGCAGGTCGCTTGTACAATACTTGTTGCGTCTTTGGTACTGATGGAAAGCTACTAGCCAAGCACCGCAAGATACATCTTTTTGATATTGACATCCCTGGGAAGATTACTTTTATTGAATCAAAAACTCTTACTGCTGGAGAGACTCCGACAATTGTGGACACAGAGGTTGGACGCATTGGTATAGGCATCTGCTATGACATTCGGTTTCCCGAACTAGCAATGATATATGCTGCTAGAGGTGCTCACTTACTCTGCTATCCTGGGGCATTTAACATGACAACTGGACCATTACATTGGGAGTTATTGCAGAGGGCAAGGGCGACAGATAATCAGTTATATGTGGCTACCTGTTCACCTGCCCGGGATACTGGATCTGGTTATGTGGCTTGGGGCCACTCCACTCTTGTTGGACCATTTGGAGAAGTTCTGGCCACTACAGAACATGAGGAGGCAATCATCATAGCAGAAATTGATTATTCAATATTGGAGCAGAGAAGGACAAATCTCCCTGTAACTAAGCAAAGACGAGGTGATCTTTACCAGTTGGTGGATTTTCAGAGGCTGAATTCCCAGTGA 1011 0.4886 MKASAVSSLLNLKSFGLHHHSPTSNLRHSPIMAASVNSERARAPPAIPMPPPPLSKFKIGLCQLSVTPDKDRNIAHARTAIQDAASKGAQLVLLPEIWNSPYSNDSFPVYAEDIDAAASPSTAMLSELSRLLKITIVGGSIPERSAGRLYNTCCVFGTDGKLLAKHRKIHLFDIDIPGKITFIESKTLTAGETPTIVDTEVGRIGIGICYDIRFPELAMIYAARGAHLLCYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDTGSGYVAWGHSTLVGPFGEVLATTEHEEAIIIAEIDYSILEQRRTNLPVTKQRRGDLYQLVDFQRLNSQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00225 336 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 57 304 IPR003010 GO:0006807
Pumo10g00225 336 FunFam Omega-amidase chloroplastic 54 330 - -
Pumo10g00225 336 Gene3D - 54 330 IPR036526 -
Pumo10g00225 336 Pfam Carbon-nitrogen hydrolase 59 307 IPR003010 GO:0006807
Pumo10g00225 336 ProSitePatterns Uncharacterized protein family UPF0012 signature. 205 225 IPR001110 -
Pumo10g00225 336 PANTHER NITRILASE-RELATED 36 328 - -
Pumo10g00225 336 SUPERFAMILY Carbon-nitrogen hydrolase 50 321 IPR036526 -
Pumo10g00225 336 CDD nit 58 321 IPR045254 GO:0016811
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00225 Pumo-Chr10 3046230 3051227 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00225 K13566 - gmx:100817195 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00225 10 3046230 3051227 Pumo10g00225 10 3046230 3051227 ECH