Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00206 ATGGGTACTAAACAAGTATATTGGGCCATCATTGTAGTATGGCTTACATTGTTTGAAGGAAATATAATGCTTGTTAAGGGTGATTTTAATTACAAGGAGGCTCTCACCAAGTCCCTTATATTCCTAGAGGCACAACGTTCAGGGAAGCTCCCTTCAAATAATAGGGTGCCTTGGAGAGGAGACTCAGCACTCGATGATGGCAAACTCGCTAATGTGGACCTTGTTGGGGGATACTATGATGCAGGGGACAACGTGAAATATGGGCTCCCCATGGCTTTCACCGTTACTACACTAGCATGGGGTGCTATGTTTTACAAGTCAGAATTTAAAGCTGCAAAGGAGTTGGATAATGTTCACGATGCCATTCGTTGGGGTACCGATTATTTTCTCAAAGCTAGTTCTCGACACAAAAGATTATATGTGGAGGTGGTAGGGGACCCAGAAGATGATCACCATTGTTGGGTTTCACCAGAACATATGAAGACAAAGAGAACGGTTAAAATGATTAGTAGTGACACGCCCGGGACTGAGATCGCAGCTGAAACTGCAGCCGCAATGGCTGCTTCTTCCATTGTATTTAGGCCCAAAGATCGTAAATATGCTCGTCGTCTTCTCAATAGAGCTAAATTGCTTTTCCAAATGGCTAAATCACATAAAGGAACCTATGATGGAGAGTGTCCCTTCTACTGCTCTTATTCCGGCTATAATGATGAAATGATGTGGGCAGCAACATGGCTATACATGGCTACCAGGAAGTCTATGTATATGAAGTACATAATAGAAGAATCCATGAGTGCTAGTGTAGCAGAATTTAGTTGGGACCTTAAATATGCTGGAGCTCAAATCCTTCTCACCCAATTACATTTCGAAGGTGAAAAGGATCTGGAAACATTCAAAAACCATGGCGATAGTTTCATATGCTCTGTCCTTCCTGATAGTCCCTACCACCAGATTAAGCTGTCTCCTGGTGGCTTTATTCATTTGAGAGATGGAGCCAACACACAGTATGCCACGGGCACAGCTTTCTTGTTCACTGTATATAGTGATTTGCTAGCCAAACATAAAGAGAAAGTCATTTGTGGAGAGAAACAATTTAGCTCGTCCCATCTGCTTGCTTTTGCTAAGAAACAGATGGATTACATTCTAGGGAAAAACCCTGAAAAAAGATCCTACATGGTTGGATTTGGAAAGAACCCACCAACGCAGGCTCACCATAGAGGTGCTTCTGTGCCAAAATTGAACAAGGGTGAAGAGGTGGTTTGTGCCTTGAGCTTCTCCAAATGGTTTCTCAAAGATGAACCTAACCCCAATGAACTCACCGGTGCCATTGTGGGTGGACCTGATTGCTATGACAAGTTCAACGACAAACGTTGGGACTCACCCAAGACTGAACCATGCACCTACGTCAATTCACTAGCCGCTGGAGCTTTAGCCAAACTTGCATCTTTGGGTTGA 1455 0.4351 MGTKQVYWAIIVVWLTLFEGNIMLVKGDFNYKEALTKSLIFLEAQRSGKLPSNNRVPWRGDSALDDGKLANVDLVGGYYDAGDNVKYGLPMAFTVTTLAWGAMFYKSEFKAAKELDNVHDAIRWGTDYFLKASSRHKRLYVEVVGDPEDDHHCWVSPEHMKTKRTVKMISSDTPGTEIAAETAAAMAASSIVFRPKDRKYARRLLNRAKLLFQMAKSHKGTYDGECPFYCSYSGYNDEMMWAATWLYMATRKSMYMKYIIEESMSASVAEFSWDLKYAGAQILLTQLHFEGEKDLETFKNHGDSFICSVLPDSPYHQIKLSPGGFIHLRDGANTQYATGTAFLFTVYSDLLAKHKEKVICGEKQFSSSHLLAFAKKQMDYILGKNPEKRSYMVGFGKNPPTQAHHRGASVPKLNKGEEVVCALSFSKWFLKDEPNPNELTGAIVGGPDCYDKFNDKRWDSPKTEPCTYVNSLAAGALAKLASLG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00206 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 380 406 IPR018221 -
Pumo10g00206 484 Pfam Glycosyl hydrolase family 9 31 477 IPR001701 GO:0004553|GO:0005975
Pumo10g00206 484 FunFam Endoglucanase 27 483 - -
Pumo10g00206 484 Gene3D - 25 484 IPR012341 GO:0005975
Pumo10g00206 484 SUPERFAMILY Six-hairpin glycosidases 27 482 IPR008928 GO:0005975
Pumo10g00206 484 PANTHER ENDO-1,4-BETA-GLUCANASE 20 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00206 Pumo-Chr10 2864543 2866969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00206 21 482 Glycoside Hydrolase AT3G43860 70.626 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00206 K01179 - gmx:100811509 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00206 10 2864543 2866969 Pumo10g00206 10 2864543 2866969 ECH