Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00194 ATGATTTTCACAATGAGTTGGGATGAGAACGATGAATTTGAGATCCCTCTTACTCAAACGGCAGCGACTTTTCACGCGCTCGCTTCGGTCGATAATAATCAACGGCCATCGAAGAAACCTAAACGCAAAACGACGACGCTTCATGGCATTGGCAAGGAGAATATCCAACCCAGCGAGGGTTGCGAGATTGAGAACTGCAGCTTGGATTTCATTCCTTCCACTATAGATTGTGTTTCTGTTTGCAGTGTTCAACGTTTGGGAGAAGAGGACAGTGTTTCTTCTTCTTCTTCTTCTTCTTCTGCGTCTTTGTCGGAGCTGAAAACGAAGGGGAATTATCTTCGCAACTCGATAGAGTCGAAGCTGGTGGTTTCGAGAACCGACGCGCTTAACCGTGCAGATGCAGACTCTGATTCGGAGCTTGATCTGTTGATGAATTTGTGCGACGAGTTAGAGGAAGTAGATAGTTCGGTTCGGTGTCCCCTGTGCGAGGTTGATATTTCGAACTTGACTGAGGAACAGCGGCATCTTCATACCAATAATTGTCTCGACGAAGGAGATGACGTTGTTGCGGTTCCTGAAGACGATAAGGGTGCTCAAAATGTGCCAAAAGTTGCTTCTGTTGTTGATTGGCTACGCGGTCTCGGTTTGGAGAAGTATGAAGATGTTTTCGTTAGGGAAGAAGTTGATTGGGACACCTTGCAATGGCTCACAGAAGAGGATCTCTTAAGCATGGGTATTACTGCCCTTGGACCTAGAAAAAAGATTGTGCATGCCCTGTGTGAACTTAGAAAAGGAGATGCTGCTACAAATGAGAAACATGAGGATGCTTCGGCGGAGCCTAGAAGGATTAGAAGCCAGAAAGTCAAATTAAAACATGACAAATCTGAAAGAAAAGTTGATGGAACTAGTAAACCAGTGGCAAACAAATTAATTACTGAATATTTCCCGGGCTTTGCATCCAAAGAAAAGAAAGTTTCTGCCCCTCCCGGAGAACAACAGGAAATGAAAAACAATGGCTTGGATTCTGGTCGTAAGCACAAATCAAAAAATATGCCAACAAATCGAAAGCTCCGTGATGTTCCCAAATGGTGTGCCGTACCAGGAACACCTTTCCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTCACACACTTCCACTTGGACCATTATCAAGGTCTCACCAAGTCATTCAATCATGGAAAGATCTATTGCTCCTCCGTTACAGCTAGACTTGTAAATATGAACATTGGAATTCCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGGTTGAAATAGCTGGTGTTGAAGTGACTTGCTTGGATGCCAATCATTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCGAACGGTAAGGTGGTGCTTCACACAGGTGATTTCCGCTTTTGTGAAGAAATGGCAATCAATCCTTTACTGCAGATGTGTCCTATCAATACTCTAATTCTTGATACAACATACTGCAAGCCACAGTATGACTTTCCAAAACAAGAGGCTGTAATACAATTCGTTATTGATGCCATTCAAGCAGAAACTTTTAATCCCAAGACTCTTTTTCTGATTGGAAGCTATACAATTGGAAAAGAAAGGCTATTCTTGGAGGTTGCTCGTTCACTTCGTAAAAAGGTTCACGTGACTGCGGCAAAGTTGCGTCTTTTAAAATGTTTGGAATTTAAGGAGGAGGATATGCAGTGGTTCACTTCAAATGAGCATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTCGCAAGCTTTAAAAGATTGAAGCACATATCAAGTCAATATAAGGATCGGTACAATCTTATAGTTGCTTTCTCCCCCACTGGTTGGACGTTTGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGATGGCAGCAGGGTACTATTATAAGGTATGAAGTGCCTTACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAGTTTGTAAAAGTTGTATCTCCTGATAACATTATACCAAGTGTGAATAATGATGGACCAGAATCTACTGATGCAATGATTTCTCTATTGCTATCATGA 2082 0.4232 MIFTMSWDENDEFEIPLTQTAATFHALASVDNNQRPSKKPKRKTTTLHGIGKENIQPSEGCEIENCSLDFIPSTIDCVSVCSVQRLGEEDSVSSSSSSSSASLSELKTKGNYLRNSIESKLVVSRTDALNRADADSDSELDLLMNLCDELEEVDSSVRCPLCEVDISNLTEEQRHLHTNNCLDEGDDVVAVPEDDKGAQNVPKVASVVDWLRGLGLEKYEDVFVREEVDWDTLQWLTEEDLLSMGITALGPRKKIVHALCELRKGDAATNEKHEDASAEPRRIRSQKVKLKHDKSERKVDGTSKPVANKLITEYFPGFASKEKKVSAPPGEQQEMKNNGLDSGRKHKSKNMPTNRKLRDVPKWCAVPGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSVTARLVNMNIGIPYDKLHVLPLNQKVEIAGVEVTCLDANHCPGSIIILFQPPNGKVVLHTGDFRFCEEMAINPLLQMCPINTLILDTTYCKPQYDFPKQEAVIQFVIDAIQAETFNPKTLFLIGSYTIGKERLFLEVARSLRKKVHVTAAKLRLLKCLEFKEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYKDRYNLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHSSFTELKEFVKVVSPDNIIPSVNNDGPESTDAMISLLLS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00194 693 Gene3D - 367 676 IPR036866 -
Pumo10g00194 693 FunFam Sterile alpha motif (SAM) domain-containing protein 200 275 - -
Pumo10g00194 693 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 355 687 - -
Pumo10g00194 693 MobiDBLite consensus disorder prediction 322 354 - -
Pumo10g00194 693 MobiDBLite consensus disorder prediction 267 302 - -
Pumo10g00194 693 FunFam DNA cross-link repair 1A protein 507 654 - -
Pumo10g00194 693 CDD SNM1A-1C-like_MBL-fold 347 504 - -
Pumo10g00194 693 CDD SAM_superfamily 206 259 - -
Pumo10g00194 693 SUPERFAMILY SAM/Pointed domain 203 264 IPR013761 -
Pumo10g00194 693 SMART SAM_4 199 265 IPR001660 GO:0005515
Pumo10g00194 693 Pfam SAM domain (Sterile alpha motif) 203 261 IPR001660 GO:0005515
Pumo10g00194 693 SUPERFAMILY Metallo-hydrolase/oxidoreductase 370 676 IPR036866 -
Pumo10g00194 693 Gene3D - 507 654 - -
Pumo10g00194 693 ProSiteProfiles SAM domain profile. 202 265 IPR001660 GO:0005515
Pumo10g00194 693 Pfam DNA repair metallo-beta-lactamase 575 679 IPR011084 -
Pumo10g00194 693 Pfam Beta-lactamase superfamily domain 387 506 IPR001279 -
Pumo10g00194 693 Gene3D - 199 276 IPR013761 -
Pumo10g00194 693 FunFam DNA ligase 6 366 526 - -
Pumo10g00194 693 MobiDBLite consensus disorder prediction 338 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00194 Pumo-Chr10 2712235 2717918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00194 205 259 Glycosyltransferase AT3G07170 50.909 2.44e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00194 K15340 - gmx:100816321 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00194 10 2712235 2717918 Pumo10g00194 10 2712235 2717918 ECH