Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00188 ATGGAATGTAATGATCATCAGGTAAGTGTAAGCTCGAAGAGAAAATCACCAGAAAATGGAGACAATTTACTCTTCAACACCTTTTCACTGGATGACCTTAATGAAGATCTCTTTGAAAGGATACTTTCATGGCTCCCAACTTCCACATTCTTTCGCCTCAATTCTGTGTGCAAAAGATGGAAATCAGTTGCTGCTTCTGCCAGTTTCAAGCTTGCCTGCTCTCACATTCCCTCAAGGGATCCTTGGTTTTTAATGGTTGCTCCCAACCTTAACCAATCTGTTATCTTTGACTCTGCTGAAAGCACTTGGAAGAGACTAAATCACCCCCCTCTTCTGCAAGAAGAATCTAGCCAAAATTGCATGCCAGTTGCAGCCTCTGGTGGCTTGATTTGCTACCGTAAATTATCAGGAAACTTCATTGTGAGCAACCCCGTCACAGGATCTTGTAGAGAAGTCCCTCCACTGCACTTTGCCTCACAACACCAACCTCTCAATGCCATTGTGATGAGCACAAGTTCCAAAGACCAACTCTCCTTCAAAATTGTGCTAGTCTTTGGTGTACTGCCAAATCTCTTGTTTAAAGTCTACAATTCAAGCTCTGGCTGTTGGGAGGGTGAGACTGCATTGAGGAGAAAGACTGAAGACAATTCCATGGAATATGATTCCACTGATGACAATGTTGTGTACTTCCTCAGCAAGGCTGGAATTGTTGTGGCAAGCAACATGCAGCGAAGCCCCTCTAAGCAATTTTCTTCTGTTATGACTAACAAAGATGGTCAAGAGATTCTGTATTTTCTTAGCTCCTCAGGGAATGTAGTAGCTTGCAATTTGACATGCAAGTGCTTCTTTGAGTACCCCAGGTTGTTGCCTGTTTTCAGTGAGTATTCCATTGATGTTGTGGAATGCAATGGGGAGATGCTAGTTGTTTTGTTATCAGAATTCTTGGAAACTGCAACTCTTAGGGTGTGGAAGTATGATGAGGCCAATAGAGGGTGGCATCAGATTGCAGCAATGCCTGCAGCAAATTCTCATGAGTGGTATGGAAAGAAAGCAGATATTAACTGTGTTGGGGCTGGAAACCAAATCTTCATATGCTTGAACTCCCCTGAGCTATGCACTTATGTTATGTGTGATTTGGAGACCAACAAGTGGGTTGAATTGCCAAAATGTTGCATAAATGGAGAAGTTATAGACTTTATGTCTGCCTTTTCATTTGAGCCTCGGATAGAGGCTTCAGTGTGA 1242 0.4275 MECNDHQVSVSSKRKSPENGDNLLFNTFSLDDLNEDLFERILSWLPTSTFFRLNSVCKRWKSVAASASFKLACSHIPSRDPWFLMVAPNLNQSVIFDSAESTWKRLNHPPLLQEESSQNCMPVAASGGLICYRKLSGNFIVSNPVTGSCREVPPLHFASQHQPLNAIVMSTSSKDQLSFKIVLVFGVLPNLLFKVYNSSSGCWEGETALRRKTEDNSMEYDSTDDNVVYFLSKAGIVVASNMQRSPSKQFSSVMTNKDGQEILYFLSSSGNVVACNLTCKCFFEYPRLLPVFSEYSIDVVECNGEMLVVLLSEFLETATLRVWKYDEANRGWHQIAAMPAANSHEWYGKKADINCVGAGNQIFICLNSPELCTYVMCDLETNKWVELPKCCINGEVIDFMSAFSFEPRIEASV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00188 413 CDD F-box_AtFBW1-like 31 69 - -
Pumo10g00188 413 Gene3D - 25 70 - -
Pumo10g00188 413 SMART fbox_2 33 73 IPR001810 GO:0005515
Pumo10g00188 413 Pfam F-box domain 30 65 IPR001810 GO:0005515
Pumo10g00188 413 PANTHER BNACNNG10540D PROTEIN 22 412 - -
Pumo10g00188 413 FunFam F-box only protein 13 25 70 - -
Pumo10g00188 413 SUPERFAMILY Galactose oxidase, central domain 93 391 IPR011043 -
Pumo10g00188 413 ProSiteProfiles F-box domain profile. 27 72 IPR001810 GO:0005515
Pumo10g00188 413 SUPERFAMILY F-box domain 27 85 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00188 Pumo-Chr10 2635120 2637565 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00188 - - gmx:100786481 795.808