Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00187 ATGCTTGTCTCGGGAGTGTCTGTGTCGTCATCATGGGATCTCAAATGGCTCCTCCAATTCGCAGTCTCCGCGTTCGTCTTGGCCATGGGATTGCACGCGCTCGTCAAGAACACAGCTTCCAAGTACTTCGAGGTTGATGCCACTTTCGACGGGGAACAACAACAACGCCACCACCACGCTATGCCTGGTATTCTCATGGACGATTCTCCCTGCGCCGTTTGTCGCAACCCCGGCAACAAGAAGTGTTCGCGATGCAAATCCGTTCGATACTGTTCACAAGCATGCCAGCAGGCGCACTGGAAATCCGAGCATAAGATGAGATGCAAGGAGTTTCAGGGCACTGAACTAACTAATCGAGCGTTCAAAGCTTCTGCGGCTGTGAATAGGACTACATCTTCAATTGTCCTCATCCCTGAATGTGGTCGCGGAACATCCAGGACTATCAAGCAGCCTAAAAGTGTTCTCTTTCCTTATGATGAATTTGTCAAATTGTTTAACTGGGACAAACCAGGATTTCCTCCTTGTGGACTCATAAATTGTGGAAACAGCTGCTTTGCGAATGTGGTTCTCCAATGTCTCTCGTTCACAAGGCCGCTTATTGCCTATCTATCAGAGAAGGGTCACCGCAGAGAATGCTGCCACAATGATTGGTGCTTTTTGTGCGAATTTGAAACCCATGTTGAAAAAGCGAGGCCAAGTTCTCAGGCATTTTCACCGATGAATATTCTCTCTCGTTTGCCCCATATTGGTGGCACACTGGGTTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTGCCATTGATGCTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGTTGTCCCTCCTAAGCATCAGGAAACAACCCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGCACTGAATGTGAGAAGAATTCAAATCAATATGAAAATATGATGGACTTGACCGTTGAAATTCATGGAGACGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAAGGAGTGGCTACATGGGGATAATATGTATAAATGTGATGGGTGCAAGGGTTATGTCAAGGCATGGAAACGACTCACAGTGAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAATAACTTTCCCTGAGACTTTAGATCTCAGCCCTTACATGAGTGAAGTTGGAGATGGATCTGATATTTATAAGCTATATGCTGTTGTAGTACATATTGATATGCTGAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAAGATTTTCGTGGAAACTGGTATAGAATTGATGATTGGAAGGTCTCGAGTGTGGAATTAGAAGAGGTGCTTTCTCAGGGTGCATACATGCTGTTGTATAGCAGGGTTAATGCTCGACCATCAGGACTTCAAAGTATCGAATTGTCAGAGACAGCAGAAGTGCAAACAGTCAAATCGGAGGTGCAGCCTGGCCCAACTAAACAAGCTGAATGCCTCTCAGATATGAAAAGTGAGACTTATAGTGAAGGATGTGAGGCTTTTCCATCTGACTGTAGTCCAGAGTTTAAGGTTTCTGGCTGTGAAAACGTGTCTTTGACTGAAATGAACTCTGGAGTTAAAAGAGAGCAGTCTAAGGATGTGGACATTATTGATGTTGCTAATGAGTCTTTCTGTAATGGTGTTGAATCATCTCATATGCATGATTCTGAAGCTGTCAAAGATCTGGGGGATATAGATTTGGACGGATCAAATACATGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGATAGTGATATGGCTAAGTCGAGCCCTTCTTCATGTTTGCCTAATGGCTTTTCTGGTGTTGATAAGGATTCTTCTGTTTCAATGGATTATCAAAACACAAGGGAAGATTCAGATTCAGACCATAAAGATGTGATTAAATGCAAGGTAACATCAAATGGCTTTGCAAATTATAGCAATGGATATGCCAGTGCAAACAAATATGATGATGTCCCAGTGGAAGATGGTGATGGTTCTTTTTCCACTGAAATACCCTCCGCTAAAATGCATCAATTGAAGGAGAGATTGGCTTCTGAAAATTCTGAAGTTGACAGAGGAAATGGAGTTAAGAACGTGGAAATATCAGGGAATAAGTTAATAATTTAG 2220 0.4284 MLVSGVSVSSSWDLKWLLQFAVSAFVLAMGLHALVKNTASKYFEVDATFDGEQQQRHHHAMPGILMDDSPCAVCRNPGNKKCSRCKSVRYCSQACQQAHWKSEHKMRCKEFQGTELTNRAFKASAAVNRTTSSIVLIPECGRGTSRTIKQPKSVLFPYDEFVKLFNWDKPGFPPCGLINCGNSCFANVVLQCLSFTRPLIAYLSEKGHRRECCHNDWCFLCEFETHVEKARPSSQAFSPMNILSRLPHIGGTLGYGRQEDAHEFMRFAIDAMQSVCLDEFGGEKVVPPKHQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRITFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFRGNWYRIDDWKVSSVELEEVLSQGAYMLLYSRVNARPSGLQSIELSETAEVQTVKSEVQPGPTKQAECLSDMKSETYSEGCEAFPSDCSPEFKVSGCENVSLTEMNSGVKREQSKDVDIIDVANESFCNGVESSHMHDSEAVKDLGDIDLDGSNTCSSVLEEISVCMEEQDDSDMAKSSPSSCLPNGFSGVDKDSSVSMDYQNTREDSDSDHKDVIKCKVTSNGFANYSNGYASANKYDDVPVEDGDGSFSTEIPSAKMHQLKERLASENSEVDRGNGVKNVEISGNKLII 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00187 739 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 79 483 - -
Pumo10g00187 739 FunFam Ubiquitin carboxyl-terminal hydrolase 15 169 489 - -
Pumo10g00187 739 ProSitePatterns Zinc finger MYND-type signature. 71 108 IPR002893 -
Pumo10g00187 739 Gene3D Cysteine proteinases 171 488 - -
Pumo10g00187 739 FunFam Ubiquitin carboxyl-terminal hydrolase 15 64 112 - -
Pumo10g00187 739 ProSiteProfiles Zinc finger MYND-type profile. 71 108 IPR002893 -
Pumo10g00187 739 SUPERFAMILY Cysteine proteinases 171 490 IPR038765 -
Pumo10g00187 739 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 175 481 IPR028889 -
Pumo10g00187 739 Pfam Ubiquitin carboxyl-terminal hydrolase 175 478 IPR001394 GO:0004843|GO:0016579
Pumo10g00187 739 CDD Peptidase_C19E 174 479 - -
Pumo10g00187 739 Pfam MYND finger 71 108 IPR002893 -
Pumo10g00187 739 SUPERFAMILY HIT/MYND zinc finger-like 69 112 - -
Pumo10g00187 739 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 176 191 IPR018200 GO:0004843|GO:0006511
Pumo10g00187 739 Gene3D - 65 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00187 Pumo-Chr10 2594372 2600308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00187 13 505 Miscellaneous Gene Families AT4G31670 65.000 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00187 K11855 - gmx:100810577 1338.94