Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00184 ATGCAACCATATGTCTTGGAGCACACAGATTTCATGCCATTTGTTGATACTCCTTTGCATGTTTCAGCGGCTGCTGGGCATGCCAATTTTGCCACTGAGATGATGAGGCTGAAGCCGTCATTTGCTTGGAAGCTGAATCAGTGTGGGCTTAGCCCCATGCACCTTGCTTTGCAAAACAAGCATTACAGGACGGTGTGTCGCTTCGTGGACATCAACAAGGACCTCGTCAGAGTCAAAGGGAGGGAGGGCCTCACTCCTTTGCATATTGCGACTCAAACCGGGAGAGGTGATCTTGTGGCCAAGCTCTTGTCAGCTTGTCCAGGTTCTATTGAAGATGTGACGGTTCGAAGTGAGACTGCGTTGCATGTAGCTGTGAAATATAATCAGGTTCAGGCTTTGGAGGTCTTGGTTGGATGGCTTCAGAGAAACTGCCAAAGACTTGCTGAGGACAGAGAAAAAAGGGTTCTAAACTGGCAAGATGAGGCAGGCAACACCGTTCTCCACCTTTCAGTTCTCAAAGGCTTCCCACAGGCAGTTAGGTTGTTGATAGACAGCAACATAGACATAAATGCCAAGAATTTTGAGGACTCAACAGCGTTGGACATAGTGGAGATTAATCAGACTCAGGCTCACACTGCAGAGATCAGAGACATGTTAGTTAGAGGTGGAGCTTTACGTGGTTTTTCACTAGCTAATGTTCCACTCCTTGAAGAAGAGCTAAGAGCAAAAATCACATTCAACGAGAAAATAGCAATATTTGTTACTCGCCTCAGAAAGAGAATATCAAACGACACACGGAATGCTTTGTTGGTGGTGGCTATTCTCTTCGCAACAAGCACGTACGAAGCAGCACTTAACCCCCCTGGTGGAGTTTACCAAGGTGAGGGTAGTAGTGTCACAAACTCTAAGAAAACTAGCGCATCATTCCATCACAGTGACTATGCAACGCGAGAGATTGTTGGGAAAGTGGTGATGAAAATGCAAACCTTCTTCTGGTTCTGGTCCTTCAATACGAGGTCCTTTTATCTTTCAATTTTGATGATATGTTTGCTAATGCCACGAGGGCGCATAAGCGTTATAGTAACTATTCCACTTTCTATCTTTTCTGGGTGCTACGTGTTCTCCATGATGGTTATATCACCGAGCCTCAGGTTAAACACTGCCACTGTGGTTATGCCAGGCATATTTATCCTATTGTACTGTTGGGGAAGCTCGATATACATTAGATTAGCCAAAAAACTTAAAATGTACGGTCATAAACAGAAAGACACGTTGAAGTTTTCAGGAGGAAATAGATGGTAA 1302 0.447 MQPYVLEHTDFMPFVDTPLHVSAAAGHANFATEMMRLKPSFAWKLNQCGLSPMHLALQNKHYRTVCRFVDINKDLVRVKGREGLTPLHIATQTGRGDLVAKLLSACPGSIEDVTVRSETALHVAVKYNQVQALEVLVGWLQRNCQRLAEDREKRVLNWQDEAGNTVLHLSVLKGFPQAVRLLIDSNIDINAKNFEDSTALDIVEINQTQAHTAEIRDMLVRGGALRGFSLANVPLLEEELRAKITFNEKIAIFVTRLRKRISNDTRNALLVVAILFATSTYEAALNPPGGVYQGEGSSVTNSKKTSASFHHSDYATREIVGKVVMKMQTFFWFWSFNTRSFYLSILMICLLMPRGRISVIVTIPLSIFSGCYVFSMMVISPSLRLNTATVVMPGIFILLYCWGSSIYIRLAKKLKMYGHKQKDTLKFSGGNRW 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00184 433 PRINTS Ankyrin repeat signature 178 192 IPR002110 GO:0005515
Pumo10g00184 433 PRINTS Ankyrin repeat signature 83 98 IPR002110 GO:0005515
Pumo10g00184 433 SUPERFAMILY Ankyrin repeat 16 208 IPR036770 -
Pumo10g00184 433 Pfam Domain of unknown function 263 354 IPR026961 -
Pumo10g00184 433 Pfam Ankyrin repeats (3 copies) 76 137 IPR002110 GO:0005515
Pumo10g00184 433 Gene3D - 9 230 IPR036770 -
Pumo10g00184 433 ProSiteProfiles Ankyrin repeat profile. 82 104 IPR002110 GO:0005515
Pumo10g00184 433 SMART ANK_2a 116 146 IPR002110 GO:0005515
Pumo10g00184 433 SMART ANK_2a 48 77 IPR002110 GO:0005515
Pumo10g00184 433 SMART ANK_2a 14 43 IPR002110 GO:0005515
Pumo10g00184 433 SMART ANK_2a 82 112 IPR002110 GO:0005515
Pumo10g00184 433 SMART ANK_2a 162 191 IPR002110 GO:0005515
Pumo10g00184 433 ProSiteProfiles Ankyrin repeat region circular profile. 82 104 - -
Pumo10g00184 433 Pfam Ankyrin repeats (many copies) 156 202 IPR002110 GO:0005515
Pumo10g00184 433 ProSiteProfiles Ankyrin repeat profile. 162 194 IPR002110 GO:0005515
Pumo10g00184 433 ProSiteProfiles Ankyrin repeat region circular profile. 162 193 - -
Pumo10g00184 433 PANTHER HOMEOBOX PROTEIN WARIAI 4 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00184 Pumo-Chr10 2566005 2567625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00184 2 407 Miscellaneous Gene Families AT5G15500 38.592 1.58e-83 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00184 - - gmx:100790227 767.689