Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00157 ATGGGTCACGTCGGTTCCAGCAAGGACGGCACCAAGGCCGCAATGGACATCGACGACGACGACGACGACGACCTCGGCGACGTAGACCTGGACCCGACCAACGCCGAAATCCTCGAGGAGCTCGGAGAAGACATGGTGAAGTATTTGTGCAAGAAAGCGTCGATGTTGTTCTTCGACGAGCACGGTCTGATCAGCCACCAGATCAACTCCTACAACCACTTCGTCCACGTCGGCCTCCAGAGAACCTTCGACTCCTTCGGCGACCTCGTCGTCACGCCCGGCTTCGACCCCTCCAAGAAGGGAGAGAACGAACACTTCCGTTACGCCTCCGTTAGGTTCGGCAAGGTCAAGCTCGACAAGCCCATGTTCTGGGGCGGTGAAGGCAACGCGCAGGAGTTTCAGATGCTTCCGCGACACGCCAGAATCCAGAGGATGACCTACGCTTCGAAAATCAAAATCGTAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGGTTCGGAGTGATAAATTCAAGACTGGGAAAGAGGAGTTCCTTGATAGGGAGATAATGAAGGAAGATGAGAGGGAAATCATCATTGGGAGATTGCCAGTCATGGTCAAGTCTGATTTATGCTGGATGAAAGAGCCGGAAAAGGAGGATTGTGAATTTGACCATGGAGGTTATTTTATCGTTAAGGGTGCAGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTAAAGAGGCTATGGGTTATGAACACTCCAGGTTGGATGATTGCCTACAAGTCACAGATGAAGAGAAACAGGATGGTTATTAAACTGGTAGCCAATTCCAGGAGTGAAGAAGTGGAGAATGGGGACATGTGTCTTACTGTATATTTTTTGTCTGTTGAGGTTCCTGTGTGGGTGCTGTTTTTCGCTCTCGGTGTCTCATCTGACAAAGAGGTTGTAGATCTCATTGGTTGTGACATTGATTATGCCAGAATTCAGAATATTCTCTTTGCGTCTGTTCGTGATGCTGATGAGAAATGTGGAGCATTTCGGAGAGGTAGGAATGCACTTCAATATTTAGAAAAATGTGTAAAAAGTGTTCAATTTCCACCTTCGGAGTCTATTCAGGAGTGCCTTGAAATGTACGTCTTTCCTGGAATTAGTGGTTTAAATAAGAAGGCGCGCTTCCTTGCATATATGGTGAAAGGTCTCTTGCTGGCTTATACTGGCCGCAGAAAATGTGACAACAGGGATGATTTTCGAAATAAGAGGCTTGAATTGGCCAGTGAGCTTCTTGACCGTGAGTTGAAAGTGCACGTTGCACATGCTCGAAAGCGAATGGCAAAGGCTTTGCAGAGAGATCTTTATGGAGATAGGGATGTACGCCCAATTGAGCATTATCTCGACGCATCAATAATTACAAATGGTTTGCAAAGGGCATTTTCAACAGGAGCTTGGTCACATCCGTATAAGAGGATGGAAAGAATCTCAGGTGTGGTTGCAAATGTTGGGCGCACTAATCCCTTACAAACCATGGCCGAGTTAAGAAGAGTGAGGCAGCAGGTCCAGTACACAGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTCCTCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATTTGGCTGTCACAGGATTAGTAAGTACTGATGTATCCGATGTATCTGAATCTATACTGCCTAAATTGTTGGATTGTGGAATGGAAGAACTTGTCGATGATACCTCCACTCATCTTGGCAACAAGGACAAAGTCTTCCTAAATGGCGATTGGGTTGGAGTGTGTCCTGATTCCAGTTCATTTGTGGCAGAGTTACGAAGTAGAAGACGTAGAAATGAACTGCCCCATCAGGTGGAAATCAAGAGAGATCAATCTCAACATGAAGTGCGCATATGCTCTGATGCAGGAAGGATTCTACGTCCTCTTTTGGTAGTTGGTAATCTACTCAAGTTTAAAGGATTTAAATCAGACCGTTACTCTTTCCAGTCTCTATTGGATAAAGGTGTGATTGAGCTGATTGGACCTGAGGAAGAAGAAGACTGCTGTACTGCCTGGGGTGTTCAGTATTTATTTGGAAAAGAAGGAAAACGATCTGTAAAGTATACACACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTACCGTTTGCTAATCATGACCATGCAAGGAGGGTACTCTACCAGTCTCAGAAGCACTCCTCACAGGCTATTGGCTTTTCTACAACAAACCCGAACATTAGAGTTGATACTTTGTCTCACCAGTTACACTATCCCCAAAAGCCCCTTTTTCGAACAATGACTTCAGATTGTCTTGGAAAACCAGCAGCCAATGAACTGGGTCAAAGTAAAATTCCTCCAAAGGCAGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTACATCTGGGATACAATCAAGAGGATTCCCTGGTGATGAACTGTGCTTCACTGCAACGTGGTATGTTCAGATCGGAGCACATAAGGAGTTACAAATCTGAAATCGATAATAAGGAATCTACGGATAAGAAGCGAAAACCTGAAGACATTGTAAATTTTGGAAAGCTACAAAGTAAAATTGGCCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGCGCTAACTTGCAAAGCGGTGATATTATTATTGGGAAGTGTGCTGAATCCGGTGCAGACAATAGTGTAAAGTTAAAGCACACTGAAAGGGGTTATGTGCAAAAGGTTGTGCTGTCTTCAAATGATGAGGGGAAAAATTTTGCTGTGGTTTCATTAAGACAGGTTCGAAGTCCAGTTCTTGGAGACAAGTTCTCCAGTATGCATGGACAAAAGGGAGTTTTGGGATTTCTCGAGTCTCAGGAAAATTTTCCTTTTACAAGACAAGGCATTGTTCCTGATATTGTAATAAATCCACATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTTGAGGCTGCTTTAGGAAAGGGGATTGCTTGTGGTGGTATACTGAGACATGCTACGCCTTTCTCCACTCCTTCTGTAGATGCCATTACCGACCAGCTTCACAGAGCTGGGTTTTCAAGATGGGGAAATGAGAGGGTATACAATGGAAGGACTGGTGAGATGGTCCGATCACTCATTTTTATGGGACCAACATTTTACCAACGTCTGCACCATATGTCTGAAGACAAAGTGAAATTCCGGAACACTGGTCCAGTTCACCCGTTGACTCGACAGCCTGTAGCTGACAGAAAACGATTTGGAGGTATCAAGTTTGGTGAAATGGAGCGTGATTGCCTGATAGCTCATGGTGCATCAGCCAACCTGTATGAACGTCTCTTCACGCTCAGTGACTCTTCTCAGATTCACATTTGCAGCAAATGCAAAAATGTCGCAAATGTGATCTTGCGGCCAGTCTCTGGTGGCCGGAAAATACGAGGACCTTATTGCCGCCACTGTGAATCTGCGGATGACATTGTGGTGGCCTATGTCCCGTATGGAGCAAAGTTATTATGCCAGGAGCTCTTTAGCATGGGCATAAACCTTAAATTTGAAACCCAACTTTGCTAG 3597 0.449 MGHVGSSKDGTKAAMDIDDDDDDDLGDVDLDPTNAEILEELGEDMVKYLCKKASMLFFDEHGLISHQINSYNHFVHVGLQRTFDSFGDLVVTPGFDPSKKGENEHFRYASVRFGKVKLDKPMFWGGEGNAQEFQMLPRHARIQRMTYASKIKIVVKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKEPEKEDCEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNTPGWMIAYKSQMKRNRMVIKLVANSRSEEVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEVVDLIGCDIDYARIQNILFASVRDADEKCGAFRRGRNALQYLEKCVKSVQFPPSESIQECLEMYVFPGISGLNKKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRVRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSDVSESILPKLLDCGMEELVDDTSTHLGNKDKVFLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRICSDAGRILRPLLVVGNLLKFKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVQYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPAANELGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNCASLQRGMFRSEHIRSYKSEIDNKESTDKKRKPEDIVNFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILRHATPFSTPSVDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRHCESADDIVVAYVPYGAKLLCQELFSMGINLKFETQLC 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00157 1198 Pfam RNA polymerase Rpb2, domain 3 495 552 IPR007645 GO:0003677|GO:0003899|GO:0006351
Pumo10g00157 1198 Gene3D - 724 1081 IPR037033 GO:0003677|GO:0003899|GO:0006351
Pumo10g00157 1198 Pfam RNA polymerase Rpb2, domain 6 723 1095 IPR007120 GO:0003677|GO:0003899|GO:0006351
Pumo10g00157 1198 Pfam RNA polymerase Rpb2, domain 5 668 714 IPR007647 GO:0006351
Pumo10g00157 1198 CDD RNA_pol_B_RPB2 63 1194 IPR015712 GO:0003899|GO:0006351|GO:0032549
Pumo10g00157 1198 Pfam RNA polymerase Rpb2, domain 2 274 416 IPR007642 GO:0003677|GO:0003899|GO:0006351
Pumo10g00157 1198 FunFam DNA-directed RNA polymerase subunit beta 1082 1196 - -
Pumo10g00157 1198 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 47 1195 - -
Pumo10g00157 1198 Pfam RNA polymerase Rpb2, domain 7 1097 1195 IPR007641 GO:0003677|GO:0003899|GO:0006351
Pumo10g00157 1198 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 55 1192 IPR015712 GO:0003899|GO:0006351|GO:0032549
Pumo10g00157 1198 FunFam DNA-directed RNA polymerase subunit beta 55 239 - -
Pumo10g00157 1198 Gene3D RNA polymerase alpha subunit dimerisation domain 1082 1196 - -
Pumo10g00157 1198 Gene3D - 405 591 - -
Pumo10g00157 1198 Gene3D - 56 241 - -
Pumo10g00157 1198 MobiDBLite consensus disorder prediction 1 26 - -
Pumo10g00157 1198 ProSitePatterns RNA polymerases beta chain signature. 948 960 IPR007121 GO:0003677|GO:0003899|GO:0006351
Pumo10g00157 1198 Pfam RNA polymerase Rpb2, domain 4 592 652 IPR007646 GO:0003677|GO:0003899|GO:0006351
Pumo10g00157 1198 Gene3D RNA polymerase Rpb2, domain 2 248 404 IPR037034 GO:0003677|GO:0003899|GO:0006351
Pumo10g00157 1198 Pfam RNA polymerase beta subunit 62 453 IPR007644 GO:0003677|GO:0003899|GO:0006351
Pumo10g00157 1198 FunFam DNA-directed RNA polymerase subunit beta 404 595 - -
Pumo10g00157 1198 FunFam DNA-directed RNA polymerase subunit beta 824 944 - -
Pumo10g00157 1198 Gene3D - 754 944 IPR014724 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00157 Pumo-Chr10 2334113 2340223 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00157 K16252 - gmx:100815934 2286.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00157 10 2334113 2340223 Pumo10g00157 10 2334113 2340223 ECH