Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00143 ATGGGCTGGTTATCAAAAACTGGGGTTGCTTCTTTCCTACAGTCTTCGGTTTTGGATATGTATTCCAAATGTGGGGTTCCCCGAGAAGCGTATCGAGCCTTTTGTGAGGTGATTCACAAAGATCTTCTGTGTTGGACGTCCATCATTGGGGTTTATGCGAGGTTTGGGATGATGGGGGAGTGTGTGAGGTTGTTTAGGGAAATGCAGGAAAATGAAATACGCCCGGATGGGATTGTTATTGGTTGCATTCTTTCCGGGTTTGGTAATTCCATGGGTGTTTCTGAAGGGAAAGCGTTTCATGGAGTGATTATAAGAAGATATTATGTGGATGATGAGAAAGTTAATGATTCGCTGTTGTTTATGTACTGCAAGTTTGGTATGTCAAGTTTGGCGGAGAGGATTTTCCCATTGTGTCGAGGGAGTGGAGATTGCTGGAACTTTATGGTTTTTGGGTATGGTAGAATAGGGGAGAACGTGAAGTGTGTTGAGCTCTTCAGGGAGATGCAGTGTTTAGGTATGCGTTCTGAATCAATTGGTGTAGTTTCGGCAATTGCCTCGTGTGCTCAGTTAGGAGCAGTTAATTTGGGAAGGTCGATTCATTGCAATGTGATAAAGGGTTTTTTGGATGGTAACAATAACATTTCAGTCACCAACTCACTCATAGAGATGTATGGAAAATGTGGTAAGATGATATTTGCTTGGAGAATATTTAATACTTCGGAGAGGGATGTTGTATCATGGAACACTCTGATTTCGTCTCTTGTTCACATCAAGCATCATGAAGAGGCTGTAAATTTATTTAATAAAATGGTTAGGGAAGACCAGAAGCCCAATACAGCCACGCTTGTGGTAGTGCTTTCAGCTTCTTCTCACCTTGCATCTCTAGAGAAAGGAGAAAGAGTTCACCGCTACATAAATGAAAGTGGTTTCACACTCAATTTACCTCTCAGGCACGGCGTTGGTTGA 966 0.4234 MGWLSKTGVASFLQSSVLDMYSKCGVPREAYRAFCEVIHKDLLCWTSIIGVYARFGMMGECVRLFREMQENEIRPDGIVIGCILSGFGNSMGVSEGKAFHGVIIRRYYVDDEKVNDSLLFMYCKFGMSSLAERIFPLCRGSGDCWNFMVFGYGRIGENVKCVELFREMQCLGMRSESIGVVSAIASCAQLGAVNLGRSIHCNVIKGFLDGNNNISVTNSLIEMYGKCGKMIFAWRIFNTSERDVVSWNTLISSLVHIKHHEEAVNLFNKMVREDQKPNTATLVVVLSASSHLASLEKGERVHRYINESGFTLNLPLRHGVG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00143 321 PANTHER OS07G0578800 PROTEIN-RELATED 39 169 IPR045215 GO:0003723|GO:0009451
Pumo10g00143 321 Gene3D Tetratricopeptide repeat domain 208 316 IPR011990 GO:0005515
Pumo10g00143 321 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Pumo10g00143 321 FunFam Pentatricopeptide repeat-containing protein At1g26900, mitochondrial 196 304 - -
Pumo10g00143 321 Pfam PPR repeat 15 40 IPR002885 -
Pumo10g00143 321 Pfam PPR repeat 144 172 IPR002885 -
Pumo10g00143 321 Pfam PPR repeat 44 72 IPR002885 -
Pumo10g00143 321 Pfam PPR repeat 218 238 IPR002885 -
Pumo10g00143 321 NCBIfam pentatricopeptide repeat 44 76 IPR002885 -
Pumo10g00143 321 NCBIfam pentatricopeptide repeat 245 279 IPR002885 -
Pumo10g00143 321 Gene3D Tetratricopeptide repeat domain 94 207 IPR011990 GO:0005515
Pumo10g00143 321 Pfam PPR repeat family 242 288 IPR002885 -
Pumo10g00143 321 Gene3D Tetratricopeptide repeat domain 9 93 IPR011990 GO:0005515
Pumo10g00143 321 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 41 75 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00143 Pumo-Chr10 2154003 2154968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00143 1 316 Glycoside Hydrolase AT3G49170 26.888 1.59e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00143 - - gmx:100780090 563.918